Nocardiopsis eucommiae: KGD82_22665
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Entry
KGD82_22665 CDS
T08767
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nec
Nocardiopsis eucommiae
Pathway
nec03030
DNA replication
nec03410
Base excision repair
nec03420
Nucleotide excision repair
nec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGD82_22665 (ligA)
03410 Base excision repair
KGD82_22665 (ligA)
03420 Nucleotide excision repair
KGD82_22665 (ligA)
03430 Mismatch repair
KGD82_22665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nec03032
]
KGD82_22665 (ligA)
03400 DNA repair and recombination proteins [BR:
nec03400
]
KGD82_22665 (ligA)
Enzymes [BR:
nec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KGD82_22665 (ligA)
DNA replication proteins [BR:
nec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KGD82_22665 (ligA)
DNA repair and recombination proteins [BR:
nec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KGD82_22665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KGD82_22665 (ligA)
MMR (mismatch excision repair)
DNA ligase
KGD82_22665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KGD82_22665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QVJ01047
UniProt:
A0A975L9C5
LinkDB
All DBs
Position
complement(4943581..4945788)
Genome browser
AA seq
735 aa
AA seq
DB search
MSAPENTTVPDEVRARHAELCRELDDHSYRYYLGKPIVSDAEYDRLMLELRSIEDRHPIL
VSQDSPTQKVGAPISVDFAEVEHLVRMESLGNAFDSEELSAWADRASAEVPVDAYLCELK
IDGLAVDLVYERGRLIRAATRGDGRVGEDITLNVRTIGVVPEQLDESVRPAPELLEVRGE
VFLPVEDFEELNRRIAVDGSHAPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYTP
AAGEETAFTSQSQAYALLGEWGLPLSDRYKVVATMDEVREYVAFYQEHRHDPAYEIDGIV
VKVDDISLQRRLGSTSRAPRWAIAYKYPPEEVTTTLVDIKVGVGRTGRVTPYGVMEPVVV
AGSEVEFATLHNAQEVVRKGVLIGDTVVLRKAGDVIPEIVGPVLDRRDGTEREFVMPERC
PECGTELGQQKEGDVDLRCPNARSCPGQLRERVAFIAGRKALDIEALGYVAATALTQPLE
PVEPALRDEGDLFDLTVEQLLPIRTHVLDPDTTEPKTDPKTGEPKVVSFFANMKGEPKKT
VEKLFEQLEEAKDKPLWRVLVSLSIRHVGPRAAEDLARHFRSMDAIRAASEEELASVDGI
GPTIARSIHEWFAVDWHAEIVRKWAAAGVRMEDEGQEPGSRVLEGVTVVVTGSLEGFTRD
GAKEAVAECGGRATASVSKKTGFVVVGDAPGSKYDKAVKLGVPVLDEAGFRVLLEDGPEA
AEKLRINPVEEAAEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcccgagaacaccaccgtccccgacgaggtacgcgcccgccacgccgagctg
tgccgtgagctggacgatcacagctaccggtactacctgggcaaaccgatcgtctccgac
gccgagtacgaccggctcatgctcgaactgcggagcatcgaggaccgccacccgatcctc
gtcagccaggactcgcccacgcagaaggtcggcgcccccatcagcgtcgacttcgccgag
gtggagcacctcgtccggatggagagcctgggcaacgccttcgactccgaggagctctcc
gcctgggccgaccgcgcctccgccgaggtcccggtcgacgcctacctgtgcgaactcaag
atcgacgggctggcggtcgacctcgtctacgagcgggggcgcctgatccgggccgcgacc
cggggcgacggccgggtcggtgaggacatcacgctcaacgtgcgcaccatcggggtggtc
cccgaacagctcgacgagagcgtgcgccccgcccccgagctgctggaggtgcgcggcgag
gtcttcctcccggtggaggacttcgaggagctcaaccggcgcatcgccgtcgacggcagc
cacgcgccgttcgccaacccgcgcaacgccgccgccggttcgctacggcagaaggacccg
agggtcaccgcgacccggccgctgtcgatgatcgtgcacggcgtcggcgcctacacgccc
gccgcgggcgaggagaccgccttcaccagccagtcgcaggcctacgcgctcctcggtgag
tgggggctgccgctcagcgaccgctacaaggtcgtggccacgatggacgaggtccgcgag
tacgtcgcgttctaccaggagcaccggcacgaccccgcctacgagatcgacggcatcgtg
gtcaaggtggacgatatctccctccagcggcggctgggctccaccagccgcgcgccccgg
tgggcgatcgcgtacaagtacccgccggaggaggtcaccaccacgctggtggacatcaag
gtgggtgtgggccgcaccggccgcgtcaccccctacggcgtgatggagccggtcgtggtg
gccgggtccgaggtcgagttcgccaccctgcacaacgcccaggaggtcgtccgcaagggc
gtgctcatcggggacaccgtcgtcctgcgcaaggcgggggacgtcatcccggagatcgtc
ggtccggtgctcgaccggcgcgacggcaccgaacgcgagttcgtcatgcccgagcgctgc
cccgagtgcggcaccgagctcgggcagcagaaggagggcgacgtcgacctgcgctgcccg
aacgcccgttcctgcccgggccagctgcgtgagcgggtggcgttcatcgccgggcgcaag
gcgctggacatcgaggcgctgggctacgtcgcggccacggcgctcacccagccgctggag
ccggtcgagcccgcgctcagggacgagggcgacctgttcgacctcaccgtcgagcagctg
ctgccgatccgcacgcacgtcctggacccggacaccaccgagcccaagacggacccgaag
accggcgagcccaaggtggtctccttcttcgccaacatgaagggcgagccgaagaagacg
gtcgagaagctgttcgagcagctggaggaggccaaggacaagcccctctggcgtgtgctg
gtctcgctgtccatccgccacgtcggcccccgcgccgccgaggacctcgcccgccacttc
cggtccatggacgcgatccgcgccgcctccgaggaggagctggcgtcggttgacgggatc
ggcccgaccatcgcccggtccatccacgagtggttcgccgtggactggcacgccgagatc
gtccgaaagtgggcggcggcgggtgtccgtatggaggacgagggacaggaacccgggtcc
cgggtgctggagggcgtgaccgtcgtggtgaccggttccctggagggtttcaccagggac
ggcgccaaggaggccgtggccgagtgcggtggccgggccaccgcctccgtctcgaagaag
accgggttcgtggtggtcggggacgcccccgggtccaagtacgacaaggccgtgaagctc
ggcgtccccgtgctcgacgaggccgggttccgcgtcctgctggaggacggccccgaagcg
gcggagaaactgcggatcaacccggtggaggaggcggcggaggagtag
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