Nostoc edaphicum: HUN01_31705
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Entry
HUN01_31705 CDS
T07001
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ned
Nostoc edaphicum
Pathway
ned03030
DNA replication
ned03410
Base excision repair
ned03420
Nucleotide excision repair
ned03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ned00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUN01_31705 (ligA)
03410 Base excision repair
HUN01_31705 (ligA)
03420 Nucleotide excision repair
HUN01_31705 (ligA)
03430 Mismatch repair
HUN01_31705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ned03032
]
HUN01_31705 (ligA)
03400 DNA repair and recombination proteins [BR:
ned03400
]
HUN01_31705 (ligA)
Enzymes [BR:
ned01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUN01_31705 (ligA)
DNA replication proteins [BR:
ned03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUN01_31705 (ligA)
DNA repair and recombination proteins [BR:
ned03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUN01_31705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUN01_31705 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUN01_31705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUN01_31705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Cytidylate_kin2
PHD_NSD
Motif
Other DBs
NCBI-ProteinID:
QMS91944
UniProt:
A0A7D7QNT7
LinkDB
All DBs
Position
6853142..6855178
Genome browser
AA seq
678 aa
AA seq
DB search
MTQIKPEVKRTEELRQLLQQASYAYYVLDTPIMEDAVYDQLYRELQQLEIQYPELTAPDS
PTQRVGERPATQFTSVRHNIPLYSLENAFNIDELKGWDQRWRRQLPKIESVEYVTELKID
GSALALTYQNGVLVRGTTRGDGVAGEDITQNVRTIRSIPLRLNFEGLEILERVEVRGEAF
LPLEVFKQINEDRQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLDFFSYTLHIPGRDDT
SIANTQWEALELLEKMGFRVNPNHKLCASIAEVAKYYEYWDTERLNLPYMTDGVVVKLNS
FKLQEQLGFTQKFPRWAIALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTV
SRATLHNSDRITQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTEPFVMPTHCPVCGQ
LVVRESGEAVTRCVNASCAAILKGSIEHWVSRDALDIKGVGEKLVYQLVDKGLVHSVADL
YELTAEKLSALERMGKKSAEKLIDAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTQKYFT
VDQLATAKQSDIEGIYGIGAEIAQSVYQWFRIDANQRLIERLQAEELQLTATEETKTVGD
GNQKFAGKTFVITGTLPTLKRDEAKALIQKAGGKVTDSVSKKTDYLVLGEDAGSKLEKAI
SLGITQLSEAQLLEILED
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacacagattaagcctgaagtaaagcgcacagaagaattgcgccagttattgcaacaa
gccagctatgcttattacgtcttagatactccaatcatggaggatgcagtctatgaccaa
ctatatcgagaattacaacaactggaaattcaatatccagagttgacagcacccgatagt
ccgactcagcgcgtgggtgaaagaccagcaacgcagtttacctcggtgcggcataatatc
cccttgtatagtctggagaatgcattcaatatcgatgagttgaaagggtgggatcagcgt
tggcggcgacaattaccaaaaatagaatcagtggaatatgtcactgaactgaaaattgat
ggttctgctttggctctcacctaccaaaatggtgttctagttagggggacaactaggggt
gatggggtggcgggtgaagatataacccaaaatgtgcggacaattcgctcaattcccttg
cgtttgaattttgaagggttagaaattctagaaagggtggaagtgcgaggcgaggcgttt
ttaccgttggaagtttttaaacaaattaacgaggacagacaaaaagcaggtgagcaatta
tttgctaatccccgcaatgccgcagctggtacactcagacaattagactcccgaattgtc
gctaaacggcggttagatttctttagctacactctgcacattcctggtagagatgacacc
agtattgccaatacccaatgggaagcgttggagttgttggaaaaaatgggttttcgagtc
aaccctaaccacaagctgtgtgcctcgatcgcagaagtggcaaaatattatgaatactgg
gatacggaacggctgaatttaccctacatgactgatggggtagtagtgaagctgaattct
tttaagcttcaggaacagctaggatttacgcagaaatttccccgttgggcgatcgctttg
aagtacccagccgaagaagcgcctacccgtgtagaaaatattgctgtgaatgttgggaga
acgggggcgttaactccattagccgaaatgcgccctgtgcaactggcgggaacaacagtt
tcccgcgcgactttacataatagcgatcgcattactcaattagacatccgcattggcgat
actgttattgtccgcaaagctggggaaatcattccagaggttgtgagggtaatcaaagaa
ctgcgtcccgctgataccgaaccctttgttatgcctacccattgcccagtctgcggtcaa
ttggtggtgcgagaatcaggtgaggcggtgactcggtgtgtcaatgcttcctgtgcggca
attctcaaaggttctattgaacattgggtcagtcgtgatgccttggatattaaaggcgtg
ggggaaaagttggtgtatcaactcgttgataaaggattggtgcattccgttgccgatttg
tatgagttgacagcagagaagttatctgcattagaaaggatggggaaaaagtcggcagag
aaattgattgatgcgatcgctcaatcaaaaaatcaaccttggtcaagggtattgtatggt
ttaggcatccgtcacgttggcagtgtcaatgctcaattgttgactcagaagtatttcaca
gtagaccagttagctacagccaaacaatcagatattgaaggcatttacggtattggtgct
gaaattgctcaatctgtgtaccagtggtttcggattgacgccaaccaaagattgatagaa
cgcttgcaagcagaagaattacaattaactgccacagaggaaacaaaaacagttggtgat
ggtaatcaaaaatttgcgggtaaaacttttgtaattacgggtacattgccaaccttaaaa
cgagatgaggcgaaggctttgattcaaaaagctgggggaaaagtgactgattcagtgagc
aagaaaacagattatttggtgctaggagaagatgccggttctaaattagaaaaggcgatc
tcgttgggaattacgcagttaagcgaggcgcaattactagagatacttgaagattaa
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