Oecophyllibacter saccharovorans: E3E11_01035
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Entry
E3E11_01035 CDS
T06092
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
neh
Oecophyllibacter saccharovorans
Pathway
neh03030
DNA replication
neh03410
Base excision repair
neh03420
Nucleotide excision repair
neh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
neh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3E11_01035 (ligA)
03410 Base excision repair
E3E11_01035 (ligA)
03420 Nucleotide excision repair
E3E11_01035 (ligA)
03430 Mismatch repair
E3E11_01035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
neh03032
]
E3E11_01035 (ligA)
03400 DNA repair and recombination proteins [BR:
neh03400
]
E3E11_01035 (ligA)
Enzymes [BR:
neh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E3E11_01035 (ligA)
DNA replication proteins [BR:
neh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3E11_01035 (ligA)
DNA repair and recombination proteins [BR:
neh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E3E11_01035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3E11_01035 (ligA)
MMR (mismatch excision repair)
DNA ligase
E3E11_01035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3E11_01035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
HHH_5
Nlig-Ia
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QDH14676
LinkDB
All DBs
Position
245066..247297
Genome browser
AA seq
743 aa
AA seq
DB search
MTSTPAQSLPAPTGPEERHAELLAQISRWDQAYHGLDAPEVSDAIYDAARRELTLLEEQH
PALKQAASETVGAPPHPAFSTVAHRVPMLSLDNVFQPEDFTRFVSGAARFLGLSQEAMDG
LAFTAEPKIDGLSVSLTYENGKLVRGATRGDGIQGEDVTANLRTLKDIPQTLGPDAPDFI
EIRGEVFMSKEDFLQLNARQETAGEKTFANPRNAAAGSLRQLDAAVTATRPLSFFAYAMG
YSSAPVAQTHMAWLEKLRSWGFVVNPLSETLSHASDVPAYVERLTRERSGLAYDIDGVVF
KLDDLSLQERLGFAGRAPRWARAWKFPAEQAITRLQKIELQVGRTGTLTPVAHLEPVNVG
GVLVSRATLHNEDEIQRLDVRPGDLVRLQRAGDVIPQILGLEAPAPERAPPFVFPSHCPV
CNAPTERPEGEATWRCTGGLHCEAQVVERLVHFASRNAFDIEGLGERSIRLFYEKGLIRT
PADIFRLHEKRDQLTALEGWGEQSVDNLLQAIRERRTVSLSRLIYSLGIRRVGARNSKVL
ARAYGDFAPWHTAMIEAVAPDSTARAALAGIMGLGETTAADIAAFFATPENAELVTQLGQ
ELDIQPDLPAANATDAPLSGHIIVFTGTLTAMARPEAKAIAERLGAQVSDSVTRRTTLVI
IGQKAGSKAKKAAELGITVIDEENWKFLSEGAPLESLPTVAPEALLPPKKASSSTSKAHA
VAAEQAEEPAAAHPPPSPPPDAN
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgacttccaccccggcgcagagcttgcctgctcccaccggtcctgaagaacggcatgcc
gaactgcttgcgcagatcagccgctgggaccaggcttatcacggccttgacgcccctgag
gtctcagacgcgatctatgatgcggcccgccgggaactcaccctgctggaagagcagcat
ccggcgctgaaacaggctgcttccgagacggtgggcgcacctcctcaccctgctttcagc
acggttgcccaccgtgtgcccatgctgtcactcgacaacgtttttcaacccgaggacttc
actcgctttgtcagcggagcggcccgtttcctgggactgagccaggaggcgatggacgga
ctcgcttttacggctgagcctaagatagacggattgtcagtcagcctgacctatgaaaac
ggcaagctcgtgcggggcgctacgcgcggcgacggaattcagggcgaagacgtgacggcc
aacctgcgcacgctcaaagacatcccccagacgctgggaccggatgcgccggatttcatc
gagatccggggtgaagtgttcatgagcaaggaagatttcctgcagctcaatgcacgccag
gaaaccgctggagagaaaacttttgccaatccccgcaatgcggccgccggctcgctgcgg
cagcttgacgcggcggtcacggccacccgtcctctgagcttctttgcctatgccatgggc
tacagcagtgcccctgtcgcgcagacacatatggcctggcttgaaaagctgcgcagctgg
ggctttgtggtcaatccgctttcggaaaccctttcccatgccagtgatgtcccggcctat
gtcgagcgcctgacccgcgaacgctccgggctggcttatgacattgacggcgtcgtcttc
aagcttgatgacctcagcctgcaggaacgtctgggttttgccggtcgcgcgccgcgctgg
gcccgggcgtggaaatttcctgccgagcaggccatcacacgcctgcagaaaatcgaactg
caggtcggccgtaccggtaccctgacccccgttgcccacctggagccggtcaatgtaggg
ggtgtgctggtctcacgtgccacgcttcacaatgaagatgagatccagcgccttgacgtg
cgacccggcgatctcgtccggcttcagcgggccggagatgtcatcccgcagattctcggt
cttgaagcgcccgcacccgagcgtgcgcctccctttgtctttcccagccactgccctgtc
tgcaatgcccccaccgagcgcccggaaggagaagcaacctggcgctgcacgggcggtctg
cactgcgaagcgcaggttgtcgagcgcctggttcatttcgcctcacgcaatgcgttcgat
atcgagggtctgggggaacgcagcatccggctgttctatgaaaaaggccttatccgcacg
ccggctgatatcttccgcctccatgaaaagcgcgaccaattgacagcgcttgaaggttgg
ggagaacagtccgttgacaatctcctgcaggcgatcagggagcggcgcaccgtctctctc
tcccgcctgatctacagcttgggtatccggcgcgtcggcgcgcgcaactcgaaggtgctg
gcgcgtgcctatggtgatttcgcgccctggcatacagcaatgattgaagccgtcgcccct
gacagcacggcacgcgcagctttggcgggtatcatggggctgggcgagaccactgcggca
gacattgccgcctttttcgccacacctgaaaatgccgagctggtcacgcagctgggacag
gaactcgacattcaacccgatctgcctgcagccaatgccacggatgccccgctttccggc
catataatcgtttttaccggcacccttacggccatggcccggccggaagccaaggcgatt
gccgagcgtctcggcgcccaggtgagcgacagcgtcacccggcgcaccacgctggtcatt
atcgggcagaaagcaggctccaaagccaagaaagccgctgagctcgggatcaccgtgatt
gatgaggaaaactggaagttcctctctgaaggcgcccccctcgaaagcctgccgaccgtg
gccccggaagcgctgctcccgcccaagaaggcctcttcctcaaccagcaaggcgcatgct
gtggcagccgagcaggcggaagaacctgcagccgcacatcctccgccctcacctccaccg
gacgcgaactga
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