Nitrosomonas eutropha: Neut_0946
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Entry
Neut_0946 CDS
T00393
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
net
Nitrosomonas eutropha
Pathway
net03030
DNA replication
net03410
Base excision repair
net03420
Nucleotide excision repair
net03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
net00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Neut_0946
03410 Base excision repair
Neut_0946
03420 Nucleotide excision repair
Neut_0946
03430 Mismatch repair
Neut_0946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
net03032
]
Neut_0946
03400 DNA repair and recombination proteins [BR:
net03400
]
Neut_0946
Enzymes [BR:
net01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Neut_0946
DNA replication proteins [BR:
net03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Neut_0946
DNA repair and recombination proteins [BR:
net03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Neut_0946
NER (nucleotide excision repair)
GGR (global genome repair) factors
Neut_0946
MMR (mismatch excision repair)
DNA ligase
Neut_0946
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Neut_0946
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RUBY_RBDX
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABI59206
UniProt:
Q0AHH6
LinkDB
All DBs
Position
complement(976793..978940)
Genome browser
AA seq
715 aa
AA seq
DB search
MKKPGNSLRAIYFYYPTTGIFLFYSPHMVILDMESEKIIEERLKALRSTIALHDFHYYVQ
DAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPTQRVGAPPLKVFARLTHQTPMLSLTNA
FTEDEAIAFDKRIREALNVDQVNYAVEPKFDGLAVSLVYTNGILTNGATRGDGYTGEDIT
LNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKADFEHLNEQQRNKGEKLFANPRNAAAGS
LRQLDSNITAARKLTFFAYDAVLSHKDQPFFSKHSEILDYLKSQQFLVAQQNGTTTGVAG
LLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQETLGYVSRAPRFAIAHKFPAQEASTELL
TIEIQVGRTGALTPVARLAPVFVGGVTVTNATLHNEDEVQRKQIMIGDTVIVRRAGDVIP
EVVAVIPEQRPAHAQPFIMPDHCPVCGSKAARLPGEAVTRCTGGLYCPAQRKQAIWHFAS
RRALDIDGLGEKLIDQLIDRELVHTPADLYKLNIDTLASLERMAEKSARNLVTAIEHSKK
TTLPRFIYALGIRHVGEATAKALANQASHLDQLMTLDIEQLQQIPDVGPIVAQSIIDFFS
EAHNREVIRQLLDSGLQWEIPNHGVQQSEQTNSAVSGKTFVLTGTLPTMTRDQAKIKIEQ
QGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVLDEDQLLSLLQNISTGAQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacccggaaactctctccgcgcaatctatttctattatcctacaaccgggatt
ttcctattctactcccctcacatggtaattcttgacatggaatccgaaaaaataattgaa
gaacgcctgaaagcattacgttcaaccattgcgttgcatgactttcattactacgtgcag
gatgcgccaattattccagatgcagattacgacaagctttttcgcaccttgcaacaactg
gaacagcaatatccgcatctgatcacaccggattcacctacccagcgggtgggtgctccc
ccgctaaaagtatttgctcggctcactcaccagacacccatgttgtcactgaccaatgct
tttacagaagatgaggccattgcctttgataagcgcattcgtgaagcgctgaatgtggat
caggttaactacgcagttgaacccaaatttgatggactggctgtcagcctggtttataca
aatggaatattgacaaacggagccacccggggagatggttataccggggaagatatcaca
ctgaatctgcgcacaattccatccatacccttgcgcctgcagacagccactgtcactgat
cagttcgaggtacgtggcgaagtggttatgttgaaagcagactttgagcatctcaatgaa
caacagcgaaacaagggggagaagctctttgccaatccacgtaatgccgctgccggctcg
ctacgtcagttggattccaatatcaccgctgcacgcaaactgactttctttgcttatgat
gccgtgctctctcataaagatcagccgtttttttccaaacatagcgaaatactagattat
cttaaatcacaacagtttctggtggcgcagcaaaatggtacgacaacgggcgtggctgga
ctattaacctattaccatgaaatgggtgccttacgcttatcccttccctatgaaattgac
ggtgtggtgtacaaagtcgataatctgacgcaacaggaaacacttggttatgtctcacgt
gctccccgttttgctattgcacataaattcccggcgcaagaagccagtaccgaattactg
acaatcgaaatccaggtgggaagaaccggtgccctgacgccggttgcacgcctggccccg
gtatttgtggggggagtaacagttaccaatgccactctgcacaacgaagatgaagttcaa
cgcaaacagatcatgatcggcgataccgtcatcgtgcgccgggcgggcgatgtcatcccg
gaagtggtggcggtaataccggaacagcgccctgcgcacgcccaaccgttcatcatgccg
gatcattgcccggtatgcggatcaaaagcggcacgtctaccaggtgaagcagtgacccgc
tgtaccggaggtttatattgtccagctcagcgtaaacaggcaatctggcattttgcttcc
cgccgtgcccttgatattgatggattgggggaaaaactgattgatcaattaattgaccgc
gaactggtgcatacccctgccgatctgtataaactgaacattgatacgctcgcgagcctg
gaacgcatggctgaaaaatccgcacgcaacctcgttaccgcaattgaacacagcaaaaaa
actacgttgccgcgttttatttatgcgctgggtattcgtcatgttggtgaagcgactgcc
aaggcgcttgctaaccaggcaagccatctcgatcagctgatgactctggatattgaacag
ttacaacaaatcccggatgtcggcccgatagttgcgcaaagtattatagattttttttct
gaagcacataaccgggaagtgatcagacaactgcttgatagcgggttgcagtgggaaata
ccaaaccatggcgtacaacaatcagaacaaaccaattcagctgtttccggtaaaaccttc
gttctgaccggaactttgccaaccatgacgcgcgatcaggccaaaatcaaaattgaacaa
caaggcggcaaggtaaccggcagcgtttcatctgccaccagttatgtcgttgcgggatca
gatcccggcagcaagtacgctaaagcaatcgggttaggcatttctgtactggatgaagat
cagctactgtcactgctgcaaaatatctcgacaggtgcacaacagtaa
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integrated database retrieval system
