Nocardiopsis exhalans: NE857_06845
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Entry
NE857_06845 CDS
T08285
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03030
DNA replication
nex03410
Base excision repair
nex03420
Nucleotide excision repair
nex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NE857_06845 (ligA)
03410 Base excision repair
NE857_06845 (ligA)
03420 Nucleotide excision repair
NE857_06845 (ligA)
03430 Mismatch repair
NE857_06845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nex03032
]
NE857_06845 (ligA)
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_06845 (ligA)
Enzymes [BR:
nex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NE857_06845 (ligA)
DNA replication proteins [BR:
nex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NE857_06845 (ligA)
DNA repair and recombination proteins [BR:
nex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NE857_06845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NE857_06845 (ligA)
MMR (mismatch excision repair)
DNA ligase
NE857_06845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NE857_06845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
HHH_3
Motif
Other DBs
NCBI-ProteinID:
USY21331
UniProt:
A0ABY5DAF4
LinkDB
All DBs
Position
1521625..1523850
Genome browser
AA seq
741 aa
AA seq
DB search
MSAPDNTTVPDEVRARHAELCRELDDHSYRYYLGNPIVSDAEYDQLMQELRDIEDKYPIL
ITQDSPTQKVGAPISVDFAEVEHLVRMESLGNAFNTDELSAWADRASAEVPVGAYLCELK
IDGLAVDLVYERGRLIRAATRGDGRVGEDITLNVRTIGVVPEQLDESVRPAPELLEVRGE
VFLPVEDFEKLNQRITADGSHAPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYTP
AKDGAEDVAFTSQSQAYTLLGEWGLPLSDRYRVVATMDEVREYVAHYQAHRHDPAYEIDG
IVIKVDDFALQRRLGSTSRAPRWAIAYKYPPEEVTTTLVDIKVGVGRTGRVTPYGVMEPV
VVAGSEVEFATLHNAQEVARKGVRIGDTIVLRKAGDVIPEIVGPVLDRRDGSEREFVMPE
RCPECGTELGQQKEGDVDLRCPNARSCPGQLRERVAFIAGRKALDIEALGYVAATALTQP
LEPAEAPLCDEGDLFDLTVEQLLPIRTHVLDPDTTEPKTDPKTGEPKVVSFFANMKGEPK
KTVEKLFEQLEEAKKKPLWRVLVSLSIRHVGPRAAEDLARHFRSMDAIRNATEEELASVD
GVGPTIARSIHEWFAVDWHAEIVRKWAAAGVRMEDEGQEPGSRVLEGVTVVVTGSLEGFT
RDGAKEAIAECGGRATASVSKKTGFVVVGDAPGSKYDKAVKLGVPVLDEAGFRVLLSEGP
EAAAGLRINPAEEATKGDTAE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcccgacaacaccaccgtccccgacgaggtacgcgcccgccacgccgagttg
tgtcgtgagctggatgaccacagctaccggtactacctgggcaacccgatcgtctccgac
gccgagtacgaccagctcatgcaggagctgcgcgacatcgaggacaagtacccgatcctc
atcacccaggactcacccacgcagaaggtcggcgcgccgatcagcgtcgacttcgccgag
gtcgagcacctcgtgcggatggagagcctgggcaacgccttcaacaccgacgaactcagc
gcctgggccgaccgcgcctcagccgaggtgcccgtcggcgcctacctgtgcgaactcaag
atcgacggcctcgcggtggacctggtctacgagcgcggccgcctgatccgggccgcgacc
aggggcgacggccgggtcggcgaggacatcacgctcaacgtccgcaccatcggggtggtc
cccgagcagctcgacgagagcgtgcgccccgcccccgagctgctggaggtgcgcggcgag
gtcttcctgccggtcgaggacttcgagaagctcaaccagcgcatcaccgccgacggcagc
cacgcgccgttcgccaaccctcgcaacgccgccgccggctcgctgcggcagaaggatccg
agggtcaccgcgacccggccgctgtcgatgatcgtgcacggcgtcggcgcgtacacgccc
gccaaggacggtgccgaggacgtcgccttcaccagccagtcgcaggcctacaccctgctc
ggcgagtgggggctgccgctgagcgaccggtacagggtcgtggccaccatggacgaggtc
cgcgagtacgtcgcccactaccaggcgcaccggcacgatcccgcctacgagatcgacggc
atcgtcatcaaggtggacgacttcgcccttcagcggcggctgggctccaccagccgcgcg
ccccggtgggcgatcgcgtacaagtacccgcccgaggaggtcaccaccacgctggtcgac
atcaaggtgggcgtgggccgcaccggccgggtcaccccctacggcgtgatggaaccggtc
gtggtggccgggtccgaggtcgagttcgccaccctgcacaacgcccaggaggtcgcccgc
aagggtgtgcgcatcggcgacaccatcgtcctgcgcaaggcgggcgacgtcatccccgag
atcgtcggcccggtgctggaccgccgcgacggcagtgagcgggagttcgtcatgcccgag
cggtgccccgagtgcggcaccgagctcgggcagcagaaggagggcgacgtcgacctgcgc
tgccccaacgcccgctcctgcccgggccagctgcgcgaacgggtcgccttcatcgccggt
cgcaaggccctggacatcgaggcgctcggctacgtggccgccaccgcgctcacccagccg
ctggaaccggccgaggcgccgctgtgcgacgagggcgacctgttcgacctcaccgtcgag
cagctcctgccgattcgcacgcatgtcctggacccggacaccaccgagcccaagaccgac
cccaagaccggtgagcccaaggtcgtctccttcttcgccaacatgaagggcgagccgaag
aagaccgtggagaagctgttcgagcagctggaggaggccaagaagaagccgctgtggcgg
gtgctggtctccctgtccatccggcacgtgggcccgcgcgccgccgaggacctggcccgc
cacttccgctccatggacgcgatccgcaacgcgaccgaggaagagctggcgtccgttgac
ggagtcggcccgaccatcgcccgctccatccacgagtggttcgcggtcgactggcacgcc
gagatcgtccggaagtgggcggccgcgggtgtccgtatggaggacgagggccaggagccg
ggttcgcgggtgctggaaggcgtcaccgtcgtggtgaccggctccctggagggcttcacc
cgggacggcgcgaaggaggccatcgctgagtgcggcggccgcgccaccgcctcggtctcc
aagaagacgggtttcgtggtggtcggcgacgcccccggatccaagtacgacaaggccgtc
aagctgggcgttccggtgctcgacgaggccggtttccgggtgttgctctccgaggggccg
gaggcggcggccggccttcggatcaatcccgcagaagaagccaccaagggggacacggcg
gagtag
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integrated database retrieval system
