Nocardia farcinica IFM 10152: NFA_29070
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Entry
NFA_29070 CDS
T00207
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03030
DNA replication
nfa03410
Base excision repair
nfa03420
Nucleotide excision repair
nfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFA_29070
03410 Base excision repair
NFA_29070
03420 Nucleotide excision repair
NFA_29070
03430 Mismatch repair
NFA_29070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfa03032
]
NFA_29070
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_29070
Enzymes [BR:
nfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NFA_29070
DNA replication proteins [BR:
nfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFA_29070
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NFA_29070
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFA_29070
MMR (mismatch excision repair)
DNA ligase
NFA_29070
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NFA_29070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
DNA_ligase_ZBD
IclR_C
BRCT
HHH
RNA_ligase
Nlig-Ia
PTCB-BRCT
Zn_ribbon_3
YhfH
Motif
Other DBs
NCBI-ProteinID:
BAD57754
NIH_Japan:
nfa29070
UniProt:
Q5YVN7
LinkDB
All DBs
Position
3089136..3091127
Genome browser
AA seq
663 aa
AA seq
DB search
MDAGERIRELADRIVELRTAYYEGAPLVADAEYDAVEDELRALIAAHPELAPDPNPLDQV
GAPAVLHAPVRHSRPMLSLEKATTPEQVAAFFERFPGQPVVVMPKLDGLSLALVYEDGRL
VRAVTRGDGTTGDDVTMLVRALVDGVPEQIDVPGRVEVRGEAVMLRSTFLAYNAAHPDKP
LINPRNAAAGTLRAKDPATVAERRLRFFGFDLDTAEGGAAADLGEGLRALGIAGAAMRMC
ADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYAAAGTRSNSPRGALAFKFAAEEK
TTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATLANQQVIRARDIKVGDTVLVRRA
GDVIPFVAGVLDASKRTGAEVEIVPPTECPSCGQPVTEQGNSRELFCTNASCPAQTVRRL
IHWASRAAADIDAIGGVWIERLAEAGILENPSDFYTLTKERLLEFDRIGEVSATRMIESI
DRSRDVGLRRALIGLAIPMASEGTAARLARAGFASLEEVADAGEERLVAVEDIGPKVAAS
LVEHLTRLRPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVA
RPTFQRLCEKAGATAASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQATIWAQLIEA
KLV
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggacgctggggaacggatccgggagctcgccgatcgcatcgtggagttgcggacggcc
tactacgagggcgcgccgctggtcgccgacgccgagtacgacgcggtcgaggacgagctg
cgcgcgctgatcgccgcacaccccgagctcgccccggacccgaatccgctcgaccaggtc
ggcgcgcccgccgtgctgcacgccccggtgcggcactcgcggccgatgttgtcgctggag
aaggcgaccacccccgaacaggtcgcggcgttcttcgagcgcttccccggtcagccggtc
gtggtcatgcccaagctggacgggctgtcgctggcgctggtctacgaggacggcaggctg
gtgcgcgcggtcacccgcggcgacggcaccaccggcgacgacgtgacgatgctggtgcgg
gcgttggtcgacggcgtgccggagcagatcgacgtgccgggccgggtcgaggtgcgcggc
gaggctgtcatgttgcgctccaccttcctggcctacaacgccgcgcacccggacaagccg
ctgatcaacccgcgcaacgccgcggcgggcacgctgcgcgcgaaggacccggccaccgtc
gccgagcgccggctccggttcttcggcttcgacctggacaccgccgagggcggtgccgcc
gccgacctgggcgaggggctgcgggccctgggcatcgcgggcgcggcgatgcggatgtgc
gccgacgccgagcaggcgcaagcggcgatcaccgacatcgaacggggccgcaacgacctg
gactacgacatcgacggcgcggtgctgcggctggccgaccgggacgcctacgccgccgcg
ggcacccgatccaactccccgcgtggcgcgctggcgttcaagttcgccgccgaggagaag
accaccgtcctcgaggcggtcacctgggatgtcggcaagaccggcaagatcgtcccggtc
gcccggctcgagccggtgttcgtcggcggcaccacggtcaccaaggcgacgctggccaac
cagcaggtcatccgcgcccgcgacatcaaggtcggcgacacggtgctggtgcgccgcgcc
ggtgacgtcatcccgttcgtggccggggtgctcgacgcctcgaaacgcaccggcgcggag
gtcgagatcgtgccgcccaccgagtgcccgtcgtgcgggcagccggtcaccgagcagggc
aacagccgggaactgttctgcaccaacgcttcctgcccggcgcagacggtgcgcaggctg
atccactgggcctcccgcgcggccgccgacatcgacgccatcggcggggtgtggatcgaa
cgcctcgccgaggcgggcattctggagaacccctccgacttctacaccctgaccaaggaa
cggctgctcgagttcgaccggatcggggaggtctcggcgacccggatgatcgaatccatc
gaccgcagccgcgatgtcgggttgcgtcgcgcgctcatcgggctcgccatcccgatggcc
tccgagggcaccgccgcgcgcctggcccgggccggtttcgcgtcgctggaggaggtcgcc
gacgcgggcgaggaacggctggtcgcggtcgaggacatcggccccaaggtcgccgcctcc
ctcgtcgagcacctgacccggctgcgtcccgaactcgagcgcctgcgcgagcgtggcgtc
tccctcgacgtccgcgaggaggacctgccgccggtggtcgccgcaggcgcgccgctggcg
ggcaagaccgtcgtcgtcaccggcgccatcagcgacccccgctccggcgagaaggtcgcc
cgccccacgttccagcggctctgcgagaaggccggggccacggcggcgtcgtcggtctcg
gccaacaccgatctgctgatcaccggcgcgggcgtcggcgaatcgaaactggccaaggcc
gagaagctcggcgtcgagatcgtcgaccaggccaccatctgggcccagctgatcgaggcg
aaactcgtctga
DBGET
integrated database retrieval system
