Nocardia farcinica IFM 10152: NFA_42650
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Entry
NFA_42650 CDS
T00207
Symbol
lig
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03030
DNA replication
nfa03410
Base excision repair
nfa03420
Nucleotide excision repair
nfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFA_42650 (lig)
03410 Base excision repair
NFA_42650 (lig)
03420 Nucleotide excision repair
NFA_42650 (lig)
03430 Mismatch repair
NFA_42650 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfa03032
]
NFA_42650 (lig)
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_42650 (lig)
Enzymes [BR:
nfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NFA_42650 (lig)
DNA replication proteins [BR:
nfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFA_42650 (lig)
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NFA_42650 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFA_42650 (lig)
MMR (mismatch excision repair)
DNA ligase
NFA_42650 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NFA_42650 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
BAD59114
UniProt:
Q5YRS7
LinkDB
All DBs
Position
complement(4417091..4419142)
Genome browser
AA seq
683 aa
AA seq
DB search
MRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDLRTPDSPTQLVGGG
FATDFTPVDHLERMLSLDNVFDVDELRAWAARVEAETGPDLHYLCEVKIDGVALNLVYER
GKLVRAATRGDGRTGEDVTLNARTIEDVPGELSAGGEFPVPELLEVRGEVYLRLADFEAL
NAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGLGRIEGYTPASQFEAYRA
LSAWGLPVSEHTRRVRGIDAVIERVAYWGEHRHDIEHEIDGQVIKVDETSLQRRLGATSR
APRWAIAYKYPPEEATTKLRAIEVNVGRTGRVTPFAVMEPVVIAGSTVAMATLHNASEVK
RKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFVMPTHCPECGTELAPEKEGDADI
RCPNQRSCPAQLRERVYHVAGRSAFDIEALGYEAAIDLLQSGAIGDEGDLFDLDEARLLT
TSLFTNKNGSLSANGKRLLENLDAAKDRPLWRVLVGLSIRHVGPTAARALAAEFGSMERI
EQASVDELAATDGVGPTIAAAVAEWFTVDWHRAIVAKWRAAGVRMVDERDESIERTLEGL
SIVVTGSLQGFSRDGAKEAILARGGKAAGSVSKKTAFVVVGDAPGAKAAKAEELGVPILD
EEGFVRLLAEGPAAVAAEEPESG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgcggtggcagcggctcgccgaggaggtgcgcgagcatcagttccgctattacgtccgt
gatgccccgatcatctccgacggcgagttcgatgccctgctgcgcgagttgcaggagctg
gaggaccggcatccggatctgcggacgccggattcgccgacgcagctggtgggcggcggg
ttcgccaccgatttcaccccggtggatcacctcgagcggatgctgtcgctggacaacgtg
ttcgatgtcgacgagttgcgcgcctgggcggcgcgggtggaggccgagaccggcccggac
ctgcactacctgtgtgaggtgaagatcgacggcgtggcgttgaacctggtgtacgagcgg
gggaagttggtgcgcgcggcgacccgcggtgacggccgcaccggtgaggacgtcacgctg
aacgcccgcacgatcgaggatgtgcccggcgagttgtccgcggggggcgagttcccggtg
ccggagctgctggaggtgcgcggcgaggtgtatctgcggctcgcggatttcgaggcgctg
aacgccgcgatcgtggcggagggcaaaccgccgtacgccaatccgcgcaacacggcggcg
gggtcgttgcggcagaaggatcccgcggtgacggcgcggcgccggttgcggatgatctgt
cacgggctgggccggatcgagggctacaccccggcgtcgcagttcgaggcgtatcgggcg
ctgtcggcgtgggggctgccggtttccgagcacacccgccgggtgcggggcatcgacgcg
gtgatcgagcgcgtggcctattggggcgagcaccgccacgacatcgagcacgagatcgac
ggccaggtgatcaaggtggacgagacgtcgctgcagcggcggctcggcgcgacctcccgg
gcgccgcggtgggcgatcgcctacaagtatccgccggaggaggcgacgaccaagctgcgc
gccatcgaggtcaacgtcggccgcaccggccgggtgacgccgttcgcggtgatggagccg
gtggtgatcgccgggtcgacggtggcgatggcgacgctgcacaacgcgtcggaggtcaag
cgcaagggcgtgttgatcggcgacacggtgaccatccgcaaggccggtgacgtgattccg
gaggtgctcggtccggtggtggacgcgcggaccggcgccgaacgcgagttcgtgatgccc
acgcactgcccggagtgcggtaccgagctggcgccggagaaggagggtgacgccgacatc
cgctgcccgaaccagcggtcttgcccggcgcagctgcgggagcgggtgtatcacgtggcc
ggccgcagcgctttcgacatcgaggcactcggatacgaggcggccatcgacctgttgcag
tccggtgcgatcggcgacgagggcgacctgttcgatctggacgaggcccgcctgttgacc
acctcgctgttcaccaacaagaacgggagtctgtcggcgaacggcaaacggctgctggag
aatctggacgcggccaaggaccggccgctgtggcgggtgctggtcgggttgtcgatccgg
cacgtcggcccgaccgcggcgcgggcgctggccgcggagttcggcagcatggagcggatc
gagcaggcgagcgtggacgagctggccgccaccgacggggtggggccgaccatcgcggcg
gcggtggcggagtggttcaccgtcgattggcaccgggcgatcgtggcgaagtggcgcgcg
gccggggtgcggatggtcgacgagcgcgatgagtcgatcgaacgcacgctggaggggctg
tcgatcgtggtgacgggctcgttgcaggggttctcccgcgacggcgcgaaggaggcgatc
ctggcgcggggcggcaaggcggccggttcggtgtcgaagaagacggcgttcgtcgtggtc
ggggacgcgccgggtgccaaggcggccaaggccgaggagctgggcgtgccgatcctggac
gaggaggggttcgtgcggttgctcgcggaggggcccgcggcggtcgccgccgaggaaccg
gaatcgggctag
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integrated database retrieval system
