Nocardioides faecalis: KG111_04430
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Entry
KG111_04430 CDS
T09118
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nfc
Nocardioides faecalis
Pathway
nfc03030
DNA replication
nfc03410
Base excision repair
nfc03420
Nucleotide excision repair
nfc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KG111_04430 (ligA)
03410 Base excision repair
KG111_04430 (ligA)
03420 Nucleotide excision repair
KG111_04430 (ligA)
03430 Mismatch repair
KG111_04430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfc03032
]
KG111_04430 (ligA)
03400 DNA repair and recombination proteins [BR:
nfc03400
]
KG111_04430 (ligA)
Enzymes [BR:
nfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KG111_04430 (ligA)
DNA replication proteins [BR:
nfc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KG111_04430 (ligA)
DNA repair and recombination proteins [BR:
nfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KG111_04430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KG111_04430 (ligA)
MMR (mismatch excision repair)
DNA ligase
KG111_04430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KG111_04430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Auto_anti-p27
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QVI59602
LinkDB
All DBs
Position
960231..962342
Genome browser
AA seq
703 aa
AA seq
DB search
MSDDSAPVVPVVPDELREEHATLSEEIEQARWRYYVLDDPTLSDADFDARMRRLEELETQ
HPELRTPDSPTQKVGGAVSTEFTAVDHLQRMESLDNAFSFDELGAWHARLARDGVQDPAL
LCELKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVRTIASVPDRLTGTDEFAVPDL
VEVRGEVFLPVEAFEALNVTMTEAGKAPFANPRNAAAGSLRQKDPRVTASRALGMVCHGI
GAREGFEPRAQSEAYRALATWGLPVSNKVRVVDSLAKVEEYVAHAGENRHSIVPYEIDGV
VVKVDDVSAQRRLGSTSRAPRWAIAYKYPPEEVNTKLLAIEVNTGRTGRVTPYGVMEPVR
VAGSTVEMATLHNGYEVKRKDVRPGDTVVLRKAGDVIPEIVGPVLALRPEGLPEWEMPTA
CPSCGTPLVEQKEGDKDRRCPNHEHCPAQVRERVFHVAGRGAFDIEGLGYEAATALLDAG
VIRNEGDVFDLDADKLLATPLFTRAPKKGEEGPQLSANGQKLLDNLGARKQVPLWRVLVA
LSIRHVGPTAARALAAEFGSMDAIRAATEEALAAAEGVGPTIAAAVIEWFGVDWHAEIVD
RWTAAGVAMADERDESVERTLEGLTIVVTGSLQHFSRDSAKEAILSRGGKAAGSVSKKTD
YVVVGESAGSKADKAEQLGVPILDEDGFVALLDNGPPETTLEE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgactccgcccccgtcgtaccggtcgtgccggacgagctccgcgaggagcac
gcaacgctgtccgaggagatcgagcaggcgcggtggcgctactacgtgctcgacgacccg
acgctgtcggatgccgacttcgacgcccggatgcgccggctggaggagctggagactcag
caccccgagctgcgcaccccggactcgcccacccagaaggtgggcggcgcggtgtcgacc
gagttcaccgcggtggaccacctgcagcgcatggagagcctggacaacgcgttctccttc
gacgagctcggcgcctggcacgcccggctcgcccgcgacggcgtccaggacccggccctg
ctgtgcgagctcaaggtcgacggcctggcgatcaacctgctctacgagaagggccgcctg
gtccgggcgctgacccgcggcgacggccgcaccggcgaggacgtcacccccaacgtgcgc
accatcgcctccgtgccggaccggctcaccggcaccgacgagttcgccgtccccgacctg
gtcgaggtccgcggcgaggtgttcctgcccgtcgaggccttcgaggcgctcaacgtcacc
atgaccgaggccggcaaggcgcccttcgccaacccgcgcaacgccgccgccggctcgctg
cggcagaaggacccccgcgtcaccgcctcccgcgccctgggcatggtctgccacggcatc
ggtgcccgcgagggcttcgagccgcgcgcgcagtccgaggcctaccgtgccctggccacc
tgggggctgccggtctcgaacaaggtgcgcgtcgtcgactcgctggcgaaggtcgaggag
tacgtcgcccacgccggcgagaaccggcactcgatcgtgccgtacgagatcgacggcgtc
gtggtgaaggtcgacgacgtctccgcccagcgccggctcggctccaccagccgcgcgccg
cgctgggcgatcgcctacaagtacccgccggaagaggtcaacaccaagctgctcgccatc
gaggtcaacaccgggcgcaccggccgcgtcacgccgtacggcgtcatggagccggtccgc
gtcgcgggctcgacggtggagatggccacgctgcacaacggctacgaggtcaagcgcaag
gacgtgcgccccggcgacaccgtggtgctgcgcaaggccggcgacgtgatccccgagatc
gtgggcccggtgctggcgctgcgccccgagggcctgcccgagtgggagatgccgaccgcc
tgcccctcgtgcggcacgccgctggtggagcagaaggagggcgacaaggaccgccgctgc
cccaaccacgagcactgcccggcgcaggtgcgcgagcgggtcttccacgtcgccggccgc
ggcgccttcgacatcgagggactgggctacgaggcggccacggcgctgctcgacgccggc
gtgatccgcaacgagggcgacgtcttcgacctcgacgccgacaagctgctggccacgccg
ctgttcacccgcgcgcccaagaagggcgaggagggcccgcagctcagcgccaacggccag
aagctgctcgacaacctcggcgcccgcaagcaggtgccgctgtggcgggtcctggtcgcg
ctgtccatccgccacgtcgggccgaccgccgcccgcgccctggcggccgagttcgggtcg
atggacgcgatccgcgccgccaccgaggaggcgctggccgccgccgagggggtcggcccg
acgatcgccgcggccgtgatcgagtggttcggcgtggactggcacgccgagatcgtggac
aggtggaccgccgccggcgtcgcgatggccgacgagcgtgacgagtcggtcgagcgcacc
ctggaggggctcacgatcgtggtcaccggctcgctgcagcacttctcccgcgactccgcc
aaggaggcgatcctgtcccgcggcggcaaggcggcgggctcggtgtcgaagaagaccgac
tacgtcgtggtcggggagagcgcaggctccaaggcggacaaggccgagcagctcggtgtg
cccatcctcgacgaggacgggttcgtcgccctgctggacaacggcccgcccgagacgaca
ctggaggagtga
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