Nocardia farcinica NCTC11134: ERS450000_03900
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Entry
ERS450000_03900 CDS
T04524
Symbol
pdg
Name
(GenBank) UV-endonuclease
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ERS450000_03900 (pdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_03900 (pdg)
Enzymes [BR:
nfr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ERS450000_03900 (pdg)
DNA repair and recombination proteins [BR:
nfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ERS450000_03900 (pdg)
Prokaryotic type
ERS450000_03900 (pdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_8
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CRY80516
UniProt:
A0A0H5PD75
LinkDB
All DBs
Position
p2:complement(400604..401506)
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AA seq
300 aa
AA seq
DB search
MEHAVRLAGRAVTPIPYGERVRVSPSSAVESGSSSAGAGSAAPSAGAAESAEPKRKTRSR
QAETKLGLVRRARRMNRTLARAFPDAHCELDFTTPLELAVATILSAQCTDERVNMTTPAL
FARYPDARAYAEANRTELEEYIRPTGFYRNKTSSLIGLGQALVEKYDGEVPHTLEELVQL
PGIGRKTANVILGNAFDVPGITVDTHFGRLVRRWGWTTEEDPVKVEHAVGELIERKDWTM
LSHRVIFHGRRVCHSRKPACGACVLAKDCPSFGLGPVEPEAAAKLVKGPEREHLLGMVGL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggaacacgcggtccggctggccgggcgagctgtcaccccgattccgtatggtgaacgg
gtgcgtgtgtccccgtcgtccgccgtcgagagcgggtcgtccagtgccggtgcggggtcg
gccgcaccgtcggccggcgctgccgaatccgcggagccgaagcggaaaacccggtcccga
caagcggaaacgaagctcgggctggtgcgcagggcccgtcggatgaatcgcacgctggcc
cgcgcgttcccggatgcgcactgtgagctggacttcaccacgccgctcgaattggcggtg
gccacaatcctttccgcgcaatgcaccgacgagcgcgtgaacatgaccacaccggcgctg
ttcgcccgatatcccgacgcgcgtgcctacgccgaggcgaatcgaaccgaactcgaggaa
tacatcaggccgaccggtttctatcgaaacaagacgagctcgctcatcgggctcggccag
gcactggtggagaagtacgacggtgaagtacctcacaccctcgaagaattggtgcaattg
ccgggaatcgggcgcaaaaccgccaacgtgatcctcggcaatgccttcgacgtgcccggc
atcaccgtcgacacccatttcggccgcctggtgcgccgctggggctggaccaccgaggag
gacccggtcaaggtcgagcacgccgtcggtgagctcatcgagcgcaaggactggacgatg
ctctcgcaccgggtgatcttccacggtcgccgggtctgccactcccgcaaacccgcgtgc
ggtgcgtgcgtgctggccaaggactgcccctcgttcgggctcggcccggtcgagccggag
gcggccgcgaagctggtcaaggggcccgagcgcgagcacctgctggggatggtcggcctg
tga
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