Nothobranchius furzeri (turquoise killifish): 107377820
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Entry
107377820 CDS
T05163
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04115
p53 signaling pathway
nfu04145
Phagosome
nfu04148
Efferocytosis
nfu04350
TGF-beta signaling pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
107377820
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107377820
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
107377820
04148 Efferocytosis
107377820
09143 Cell growth and death
04115 p53 signaling pathway
107377820
09144 Cellular community - eukaryotes
04510 Focal adhesion
107377820
09142 Cell motility
04820 Cytoskeleton in muscle cells
107377820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nfu04131
]
107377820
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107377820
Membrane trafficking [BR:
nfu04131
]
Endocytosis
Phagocytosis
Opsonins
107377820
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107377820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
cEGF
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107377820
NCBI-ProteinID:
XP_015803172
UniProt:
A0A1A8UTA9
LinkDB
All DBs
Position
sgr04:57657918..57667269
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLAGVFLLLMLWTCEGSRVAESRDDNSVYDLFELIRVPSKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFGDLVDSIYAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVYSTENKQQVVSIEKVDLATGHWKNITLFVQEDRAQLFAGCEEVNTAELDV
PIQSVLTQDIPAGAQLRVGKGAVSDRFMGVLQNVRFVFGTTLEAILRNKGCQSSVTSDTM
ILDVLNGSSAIRTEFTGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSNELRQLTN
ENKLIKNRIGIHSGVCIHNGIVRKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCMGEGRQT
EKCQKSPCPINGNWGPWSPWGTCSLSCGGGVQTRKRLCNDPAPLYGGKECVGDAIDKQMC
NKKSCPIDGCLSNPCFSGAKCTSLPDGSWKCGKCPVGYTGNGVKCKDVDECKEVPDACFE
FNGMHRCENTQPGYNCLPCPPRFSGPQPFGQGVEQAAANKQVCTPRNSCLDGSHDCNKNA
RCIYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNSDLICVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAIDIDGDGIMNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDGCKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGTIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggcaggagtgtttttgctgctgatgctttggacctgtgagggttcgagagtc
gcagagagccgggatgacaatagtgtgtatgacttgtttgagctgatccgagtccccagt
aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctcatccccccggttcccgagagcgcctttggggacctggtcgattcc
atttacgcagagcgcggtttcctccttctgctcaacttcaagcagttcaaacgaaccagg
ggcagcctcctgaccgtggagaagcgggacgggtccggacccgtgtttgagatcgtctcc
aacggcaaggccaacactctggacatcgtttactccaccgagaacaagcagcaggtggtc
tccatcgagaaggtggatctggccacgggtcactggaagaacatcacgctgtttgtgcag
gaggaccgggcgcagctgttcgcgggatgcgaggaggtgaacaccgccgagctagacgtg
ccgatccaaagcgtcctgacacaggacatcccggccggcgcgcagctcagggtcggaaaa
ggcgcagtgagcgacaggttcatgggggtgctgcaaaacgtgcggtttgtgtttggaaca
acgctggaggccatcctccgcaacaaaggatgccagagctctgttacaagtgacacgatg
atcctggatgtcctcaacgggtcatcagccatcagaaccgagttcacaggacacaagact
aaagacctgcagatggtctgcggtttctcctgtgaggatcttatcagcatgttcaaggag
ctgaagggactcggtgtggtggtgaaggagctgtccaacgagctccgacagctgacgaat
gagaacaagctgattaaaaacaggatcggcattcacagcggcgtctgcatccacaatggc
atagtgcgcaagaacagagacgagtggaccgtcgacgattgcaccgagtgcacttgtcag
aattctgctactgtgtgccggaaaatctcctgtccactgatcccctgtgctaatgcaacc
gttcccgatggagagtgctgtccacgttgtggaacgccaagcgactatgcagaggacggc
tggtcgccctggtctgaatggacccattgttctgtgtcttgtgggcggggcatccagcag
cgtggccgctcctgcgaccgcatcaacaacaactgcgagggcacttctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgcttcaagcaggatggcagctggagtcactgg
tcaccctggtcatcatgctctgtcacctgtggtgctggcgtcatcactcgcattcgcctc
tgcaactcccccactcctcagctgggaggcaaggactgcatgggagagggccggcagact
gagaagtgccagaagtccccatgtccgatcaatgggaactggggaccctggtcaccctgg
ggtacgtgctcactcagctgcggtggtggtgtccagactcgtaagcgtctttgcaatgat
cctgctccactgtacggtggaaaagagtgtgttggcgatgccatcgacaaacagatgtgc
aacaagaaatcctgtccaattgatggatgcctgtccaacccttgcttttctggtgccaag
tgtactagtctccccgatggttcgtggaaatgtggaaagtgcccagttggctacacaggc
aatggcgtaaagtgcaaagatgttgatgagtgcaaggaggtcccagatgcttgttttgaa
tttaacggcatgcatcgctgtgagaatacacaaccaggctacaactgtctgccctgccct
ccacgcttctcaggaccccaaccatttggtcaaggtgtagagcaagctgctgctaacaaa
caggtgtgcactcctcgtaattcctgcctcgatggaagccacgactgcaacaaaaatgct
cggtgtatctaccttggacactttgctgatcccatgttccgctgtgagtgcaaacctggt
tatgcgggtaatggtcacatctgcggagaggacacagatctggatggatggcccaattct
gatctaatctgtgttgagaacgccacctaccactgcaaaaaagacaactgtcccaatctt
cccaactcgggacaagaggattatgataaggatggaatcggtgacgcctgtgatgacgat
gatgacaacgatggcattcctgatgacagggacaactgtccattcgtgtacaatccaagg
cagtatgactacgatcgagatgatgtgggtgaccgctgtgacaactgcccttacaacagt
aaccctgaccagacagacacagacaacaatggagagggagatgcctgtgccatagacatt
gatggagatggaataatgaatgagaaggacaactgtccctacgtttacaatgttgaccag
agagacacagatcttgacggagtgggagacatgtgtgataactgtcctctggagcataat
cccgatcaggtggattcagatgacgaccgcgtgggagacaagtgtgacaataaccaagat
attgatgaggacggacatcagaacaatctggacaactgcccttatatacccaatgctaac
caggctgaccacgacaaggacggcaagggagatgcttgtgaccatgacgatgacaacgat
ggtatccctgatgacaaagataattgcagactggccttcaatcccgaccagctggactca
gatggtgatggtcgtggagatggttgcaaagacgattttgatcaagacaacgtgcctgac
atctatgacgtgtgccctgagaactttgatatcagtgagaccgactttcgtaagttccag
atggttcctctggatccaaaaggcacctcccagattgatcctaactgggtggtccgccac
cagggcaaggagctggttcaaactgtcaactgtgatcctggcattgctgtcggttatcat
gagtttaacgcggttgacttcagtggaactttcttcatcaacacagagagagatgatgat
tatgctggctttgtctttggctaccagtccagttccaggttctacgtggtgatgtggaag
cagatcacacagacctactggtcaagtaaacctaccaaggcccagggctattcaggcctg
tccatcaaagtggtgaactccaccactggccctggagagcacctcaggaatgccctctgg
cacacgggcaacactgcaggacaggtccgtactctctggcacgaccctaagaatgttggt
tggaaagatttcaccgcctacagatggcatctgatccacaggccaagaacaggactcatt
agagttgtaatgtatgagggaaagaagatcatggccgattctggtaccatctatgacaag
acatatgcagggggaaggctgggcctctttgttttctcacaagagatggtgtacttctct
gacctcaagtatgaatgcagagatgcataa
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