Nothobranchius furzeri (turquoise killifish): 107378569
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Entry
107378569 CDS
T05163
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107378569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107378569
Spliceosome [BR:
nfu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107378569
Complex C
U5 SnRNP specific factors
107378569
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
GTP_EFTU_D2
EFG_C
EFL1
EFG_III
EF-G_D2
Roc
Ras
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
107378569
NCBI-ProteinID:
XP_015804349
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Position
sgr05:complement(<14878988..14887751)
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AA seq
881 aa
AA seq
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MEADLYDEFGNYIGPELDSDDDDDELDAEDRDVDEGDDDDDDDEHGDADEDVPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRHRQFTLMEQELPATVYDMEFLA
DLMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVG
IKSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSMRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVV
SPLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKSRKFTKKA
PSSNSKRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVC
NRFFGEFTGLVDMCVQHIPSPQEGAKTKKEHTNTGGLNSDLGEAMAECDPDGPLMCHTTK
MYSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIE
VNRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQRDFIAEVLRWDAQQKEQDNHDHPEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPAV
TFCETVVETSSLKCFAGTPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DEPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPRSEER
NT seq
2642 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatttgtatgacgagtttggcaactacatcggtccagagctggactctgac
gatgatgacgatgaactggatgcagaagacagagatgttgatgagggagatgatgatgat
gatgatgatgagcatggagatgctgatgaggatgtccccggcatggaggtggtcctgcat
gaggacaagaagtactaccccacagcagaggaggtttatggcccagaagtggaaactatt
gtccaggaagaagacacgcagcctctcacagagcccatcattaagcctgtgagacacagg
cagttcactctgatggaacaggagttgcccgccaccgtctacgacatggaatttcttgct
gatctgatggatggccctgagctgatccgcaacgtcaccctctgtggtcacctccatcat
ggaaagacttgttttgtggactgcctgattgagcagacacacccagaaatcagaaagaga
gatgatgttgatctgcggtacacggacattctctttacagagcaggagagaggagttggc
atcaagagcactccggtcacaatggtgctgcctgactccagaggaaaatcgtacctcttc
aacatcatggatactccaggtcacgtgaacttctctgacgaggtcacatccagcatgagg
atctcggatggggttgtcctcttcatcgatgcagcagaaggagtgatgctgaacacggag
cgtctgatcaagcatgcggtgcaggagcgcatggccatcaccatctgcatcaacaaggtg
gaccgactcatcgttgagctcaaattgcctccaacagatgcttattataaacttcgccac
attgtggatgaggtcaacggtttgctcagcacgtattccacggatgagaacttggtggtg
tctcctctccttggaaacgtgtgctttgccagctctcagtacagcatctgtttcacgctg
gggtcgtttgcaaagatctactcggacacctacggggacatcaactacaacgagtttgcc
aagcggctctggggagacatttacttcaaccccaaatctcgcaagttcacaaagaaagct
cccagcagcaactcaaagcgcagctttgtggagtttgtcctggagcctctttacaagatc
ctctcacaggtggtcggagacgtggacacctctctccctcgagttctggatgagcttggg
atccacctgaccaaagaggagctgaaactgaacatcaggcctctgcttcggctggtctgt
aaccgattcttcggagagttcaccgggctcgtggacatgtgtgtgcagcacatcccctca
ccacaagagggcgctaagaccaagaaagagcacaccaacactggaggtctaaactcagat
ttgggggaggccatggcggagtgcgaccctgatggtccgttgatgtgtcacaccaccaag
atgtatagcacagaggacggggtccagttccatgcctttggcagggtgctgagtggtacc
atccaggcgggccagccagtgaaggtgctgggagagaactacacgctggaggacgaggag
gactctcagatctgcaccgtgggtcgtctctggatctcggttgccagataccagattgaa
gtgaatcgagtccctgcggggaactgggtgctgatagagggttgtgaccagcccatcgtg
aagaccgccacaatcacagagcccagaggcaacgaagaggctcagagagacttcatcgct
gaagtgcttcgctgggacgcccaacaaaaagaacaagataaccatgatcacccggagctg
ccgaaaatgttggacggcctgaggaaggtcaacaagagctacccgtctctcaccacaaag
gtggaggagtctggagaacacgtcatcctgggaacaggagagctctacctggattgtgtc
atgcatgatctgagaaaaatgtactctgaaattgacattaaagttgccgacccagctgtg
actttctgtgaaacggtggtggagacttcatcgctgaagtgcttcgctgggacgcccaac
aaaaagaacaagataaccatgatcgccgaacccctggagaagggactggctgaggacatc
gagaacgaagtggtgcagatcacatggaacaggaagaagctgggagagtttttccagacg
aagtatgactgggatctgctggctgccagatctatctgggcgtttggaccagacacgacc
gggccaaacatcctagtagacgacacgctaccttcagaggtggacaaggcgctgctgggg
tctgttaaagacagcatcgttcagggcttccagtggggcaccagggaggggcctctttgt
gacgaacccattagaaatgtgaagtttaagatcttggatgctgtgatcgctcaggagcct
ctccacagaggaggaggtcaggttatccctacggccaggagggttgtttactctgctttc
ctcatggccacgccgaggctgatggagccgtattatttcgtagaggtccaggctccggct
gattgtgtgtcagcggtctacacggtgctggctcggaggagaggtcacgtcacccaggat
gcacctattcccggctctccactctacacaatcaaagcttttatcccaagatcggaagag
cg
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