Natronobacterium gregoryi: Natgr_1725
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Entry
Natgr_1725 CDS
T02383
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nge
Natronobacterium gregoryi
Pathway
nge03030
DNA replication
nge03410
Base excision repair
nge03420
Nucleotide excision repair
nge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Natgr_1725
03410 Base excision repair
Natgr_1725
03420 Nucleotide excision repair
Natgr_1725
03430 Mismatch repair
Natgr_1725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nge03032
]
Natgr_1725
03400 DNA repair and recombination proteins [BR:
nge03400
]
Natgr_1725
Enzymes [BR:
nge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Natgr_1725
DNA replication proteins [BR:
nge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Natgr_1725
DNA repair and recombination proteins [BR:
nge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Natgr_1725
NER (nucleotide excision repair)
GGR (global genome repair) factors
Natgr_1725
MMR (mismatch excision repair)
DNA ligase
Natgr_1725
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Natgr_1725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
5_3_exonuc
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AFZ72922
UniProt:
L0AIB8
LinkDB
All DBs
Position
complement(1709034..1711127)
Genome browser
AA seq
697 aa
AA seq
DB search
MSRADSVDEDNPYLRDPPTDFDPVEELSADEAREQVALLREAIREHDRRYYVETDPIIAD
RTYDALFARLQELEDAFDLTHPDSPTRSVGGEPIEEFETVEHVAPMLSIDQSGEEADVRE
FADRVRREVGDVRYVCEPKFDGVSMAFVYEDGSLERAVTRGDGREGDDVTQNARTIGSVP
QKLHGDSPDFLAVRGEVYMPKDAFQEHNRERIERGEEPFANPRNATAGTIRQLDPSIVAE
RPLEVFFFDVLEASDLEDSHREELERFPEWGLRVTDQVETAASIDDAIDYRDRMLEARDD
LNYEIDGTVIKVDDRDAREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQIGRTGRVTP
VALLEPVDVGGVTVSRASLHNPEEIAEKNVDVGDTVRVQRAGDVIPYVAEVVEKGAENDP
ESHYELPDHCPVCDSAIERDGPMAFCTGGLACDAQLRRSIEYYASDDGLDLEGLGEKSVR
QLVDAGLLESVADLYELDGENLTALEGWGEKSAENLLSEIEDTRNPPLADFLSALGIPHV
GPTTARELAREFARFETVRETAETEPERLEGVDDVGETVAGQIHDFFTSEANAAAVDDVL
AHVSPTESELESGGDELEGLTFVFTGSLEGVTRSEAQETVEAHGANATGSVSGNTDYLVV
GENPGQTKRDDAGDNDVPIVDEDEFRELLAERGIDLE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcgccgatagcgtcgacgaagacaacccctatctccgcgatccgccgaccgac
ttcgaccccgtcgaagagctatcggcggacgaggcccgcgagcaggtcgcgttgctccgc
gaggcgatccgggagcacgaccgacgatactacgtcgagaccgatccgataatcgccgac
cgcacgtacgacgcgctctttgcacgcctgcaggaactcgaggacgcgttcgacctcacc
caccccgacagtccaaccaggagcgtcggcggcgaaccaatagaggagttcgagacggtc
gaacacgtcgcgccgatgctctcgatcgaccagagcggcgaggaggcggacgtccgggag
ttcgcggatcgagttcgtcgagaagtgggagacgttcggtacgtctgtgaacccaagttc
gacggcgtctcgatggcgttcgtctacgaggacggctcgctcgagcgtgccgtcacccgc
ggcgacggccgcgagggcgacgatgtcacccagaatgctcgcaccatcggctccgtcccg
caaaaactgcacggcgactcccccgacttcctcgcggtgcgtggcgaggtctacatgccc
aaagacgcgttccaggaacacaaccgcgagcggatcgaacgcggcgaggaaccctttgcc
aacccacgaaacgcgaccgcggggacgatccggcaactcgacccctcgatcgtggccgag
cggccgctcgaggtctttttcttcgacgtgctcgaggccagcgacttagaggacagccac
cgcgaggaactcgagcggttccccgagtgggggctgcgggtgacggaccaggtcgagaca
gcagcgtcgatcgacgacgcgatcgactaccgcgaccgcatgctcgaggcccgagacgac
ctgaactacgaaatcgacggtaccgtgatcaaggtcgacgaccgcgacgcccgcgaggaa
ctcggccgcaccgccagacacgaccgctacgcgttcgcctacaagttccccgcacgtgcg
gaggtcacccccatcgtcgacgtcgcggtccagatcggccgcacggggcgggtgactccg
gtcgccctgctcgagccggtcgacgtcggcggggtcacggtctcgcgggcgagtctgcac
aaccccgaggagatcgccgagaagaacgtcgacgtcggcgacaccgttcgcgtccagcgg
gcgggcgacgtgatcccctacgtcgcggaggtcgtcgagaaaggagcggagaacgatccc
gagagccactacgaacttcccgaccactgcccggtctgtgacagtgcgatcgaacgcgac
ggcccgatggcgttctgtaccggcgggctcgcttgcgacgcacagctccggcggtcgatc
gagtactacgcgagcgacgacggcctcgacctcgaggggctgggcgagaagagcgtccgc
cagttagtcgacgccggcctgctcgagtccgtcgcggacctctacgaactcgacggcgag
aacctgaccgcactcgagggctggggcgagaagagcgccgagaacctcctctccgaaatc
gaggacacccggaacccaccgctcgccgactttctctcggcgcttggcatcccccacgtc
ggcccgacgacggcccgcgaactcgcccgcgagttcgccaggttcgagaccgtccgggag
actgccgaaaccgaacccgagcgactcgagggcgtcgacgacgtcggcgagaccgtcgcc
ggccagatccacgacttcttcacgagcgaggcaaacgccgcggcggtcgacgacgtgctc
gcacacgtctcgcccacggaatcggaactcgagtccggcggcgacgaactcgaggggctg
accttcgtcttcacgggctcgctcgagggcgtcacgcgcagcgaagcccaggagaccgtc
gaggctcacggcgcgaacgccacgggaagcgtctccggcaacacggactacctcgtcgtc
ggcgagaaccccgggcagacgaaacgcgacgacgccggggacaacgacgtgccgatcgtc
gacgaagacgagttccgggagttactggcggagcgtgggatcgacctcgagtga
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