Novosphingobium ginsenosidimutans: FRF71_10605
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Entry
FRF71_10605 CDS
T06189
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03030
DNA replication
ngf03410
Base excision repair
ngf03420
Nucleotide excision repair
ngf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRF71_10605 (ligA)
03410 Base excision repair
FRF71_10605 (ligA)
03420 Nucleotide excision repair
FRF71_10605 (ligA)
03430 Mismatch repair
FRF71_10605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngf03032
]
FRF71_10605 (ligA)
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_10605 (ligA)
Enzymes [BR:
ngf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRF71_10605 (ligA)
DNA replication proteins [BR:
ngf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRF71_10605 (ligA)
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRF71_10605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRF71_10605 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRF71_10605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRF71_10605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QEA16544
UniProt:
A0A5B8S5U8
LinkDB
All DBs
Position
2135558..2137618
Genome browser
AA seq
686 aa
AA seq
DB search
MGFELSEADAANELMRLAKQIAYHNKRYHAEDAPEISDADYDALVRRNAELEAAFPHLIR
PDSPSRQVGHEVAASPLAKVTHEVRMMSLDNAFADEDVTDFAARVRRYLNLPDDAEVAMT
AEDKIDGLSCSLRYEHGKLVRAATRGDGQVGEDVTPNVATIADIPQALKGAVPEVFEIRG
EVYMAKADFVALNAAQEARGDKVFANPRNAAAGSLRQKDAAVTAARPLRFLAHGWGAASA
VPGDTQSAVMAAIAAWGVPVSPLLVRCESVKAMLAHYRSIEHQRADLPYDIDGVVYKVDR
LDWQERLGFAAKAPRWGIAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLTPVTVGGVVV
ANVTLHNRDEIARLGLRVGDRVVLQRAGDVIPQVVENLTRDAPRAAYAFPDHCPECASEA
VAEEGEVDVRCTGGLICPAQRVERLKHFVSRAALDIEGLGEKTIIEFFGLGWLESPADIF
RLRQRRGEIVGREGWQDKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKRFT
TLEALRSVAEAAHGGDAEALAELTGIDGIGPAVADALGDFFHEPHNVAVWEDLLSEVSPP
PYVVETKDSAVAGKTVVFTGALETMSRDEAKAQAERLGAKAAGSVSAKTDLVVAGPGAGS
KLKKAQELGIEVIDEAAWAEIVRSAG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgaactctccgaagcggacgccgccaatgaactgatgcgactggcgaagcag
atcgcctatcacaacaagcgctatcatgccgaggatgcgccggagatctccgacgcggac
tatgacgcactggtccgccgcaatgctgagctggaagcagcctttccgcatctgatccgg
cccgacagcccaagccgccaggtcgggcacgaagtcgccgcctcgccgctggccaaggtc
acccacgaagtgcggatgatgagcctcgacaacgcgtttgcggacgaggacgtcaccgat
ttcgccgcgcgggtgcggcgctatctcaacctgcccgacgatgccgaagtggcgatgacc
gccgaggacaagatcgacgggttgtcttgctcgctgcgctatgaacatggcaagctggtg
cgggcagcaacgcgcggggatgggcaggtgggtgaggatgtgacgcccaacgttgccacc
atcgccgacattccgcaggcgctgaagggcgcagtgcccgaggtcttcgagatccgcggc
gaggtctatatggccaaggccgatttcgtcgcgctgaatgctgcgcaggaagcgcgcggg
gacaaggtctttgccaacccgcgcaatgccgccgccggctcgctgcggcagaaggatgcc
gcagtcaccgccgcccgcccgctgcgcttcctggcccatggctggggtgcggcttcggca
gtgccaggtgacacccagagcgcagtcatggccgcgattgcggcgtggggcgtgcccgtt
tccccgctcctggtgcggtgcgaaagcgtcaaggcgatgctggcccactatcgcagcatc
gagcatcaacgcgctgatctgccttatgatatcgacggtgtggtctacaaggttgaccgg
ctcgactggcaggagcggctcggctttgccgccaaggcaccgcgctgggggatcgcccac
aagttcccggccgagcgcgctgaaaccacgctggaagcgatcgatatccaggttggccgg
accggcaagctaaccccggtcgggcggttgacgccagtcacggtcggcggggtggtggtg
gccaatgtcacgctccacaaccgcgacgagatcgcccggctgggcctgcgcgtgggggac
cgggtcgtgctgcaacgcgccggcgacgtgatcccgcaagtggtcgaaaacctcacccgc
gatgcgccgcgcgcggcctatgccttccccgatcattgccccgaatgcgccagcgaagcc
gtcgccgaagagggcgaggttgacgtgcgctgcactggcggcctgatctgcccggcgcag
cgggtcgagcggctcaagcatttcgtcagccgcgccgcgctcgatatcgaggggctgggc
gagaagacgattatcgagttctttggccttggctggttggagagcccggctgatatcttc
cgcctgcgccagcgccgcggcgagattgtcgggcgcgagggctggcaggataagtctgtg
gacaacctgttggcagcgatcgaagccaagcgcgcgcccgatgctgcgcggctgctgttc
ggcctgggcatccgccatgtcggcgcggtcacggcgcgggacctgctgaagcgctttacc
acgcttgaagccctgcgctcggttgccgaggcggcgcacggcggcgatgccgaagcactg
gccgaattgaccggcatcgacgggatcggccccgccgttgcggatgcgctgggcgacttc
ttccacgagccgcacaatgtcgccgtatgggaagacctgctctctgaagtcagtccgccg
ccttacgtggtcgagacgaaggatagcgccgtggccggcaagaccgtggtcttcaccggt
gcgctagagaccatgagccgggatgaggccaaggcccaggccgagcggctgggggccaag
gcggcgggttcggtctcggccaagaccgacctggtggtggccgggccgggcgccgggtca
aagctgaagaaggcgcaggagcttggtatcgaagtgatcgatgaagccgcttgggcagaa
attgtccgctcggctgggtag
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