Nannospalax galili (Upper Galilee mountains blind mole rat): 103735397
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Entry
103735397 CDS
T03372
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain containing 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ngi03036
]
103735397 (Smchd1)
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103735397 (Smchd1)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103735397 (Smchd1)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103735397 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
103735397
NCBI-ProteinID:
XP_008832833
LinkDB
All DBs
Position
Un
AA seq
2003 aa
AA seq
DB search
MAAAGAGGPSAGSGDAGRPDGCRTVYLFDRRGKESELGDRALQVAERADFAGFRASVCQT
IGISSEEKFVITTTSRKEITCDNFDEIVKDGVTLYLLQSVDQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNVGVRRIQIKLLFDETQGKPAVAVV
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITNDDE
RFLHSLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGNEVR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTASDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCLILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKTVRKYVEDEMARLPDRLSVTWPEGDELLPNEIRSAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHTSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTTQLLADIQPVLEASGLALHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPHQLKVKPDSEILVIENGTAFPFQVEVVDESDNITCQ
PKLIIHCKFLGVPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAIIEIPSCKDVSP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREINI
TPALAEKIKVNWTPEVNKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDDPKHLKCELKGGKTVQMGQELQGEIVIIVADQYGNQISAFSPDSLSALSVAGVGLDN
SNLKTTLQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRQLQNSLIVQLCDQWDNPAPVSNVKINLVKANNLKLTSSNLQHKTDEKG
RANLGVFTVFAPRGEHTMQVKAVYNKSTIEGPTIKLMILPDPEKPIRLNVKYDKDASFVA
GGVFTDFMVSVISEDDSIIKNINPARISMKMWKLSSSMNRPPANAETFSCNKIKDNDKED
GCFYFREKIIPNKVGTYCIQFDFMMDKANMLNSEQVIIDVLPNEPVKLVPDVPPATPAVS
NVRSVASRTLVRDLHLTITDNYGNHTGVNLTGAIVATIKGFNEEDTDTPLFMGKLRTLEF
PFVNGSAEITSLVLAENSPGRDSTEYFIVFEPRLSPLLRTLESYSLPFMFYNDVKKQQQM
AALTREKDQLSKSIIMYRSLFEANKQLLDEMKCQVEEAKLKEAQLRNELKTYNIDIPATQ
QIPHIEGLLKRKLTEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHFRNGKLHFKP
FGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCKLGSVN
EDLNGQLQYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTRKCNDSLRHSPKVELTECP
VPSKRMRRESTRQNRRPKGDLPN
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcgctggcggcccctcggcggggtctggggacgctggcaggccggac
ggctgcaggacggtgtacttgtttgaccggcgcgggaaggagtcggagctcggggaccgc
gcgctgcaggtcgcggagcgcgccgacttcgcgggcttccgcgcctctgtgtgtcagaca
attggcatctcatctgaagaaaagtttgttattacaactacaagtaggaaagaaattacc
tgtgataattttgatgaaatcgttaaagatggagtcaccttgtacctgctacagtcagtt
gatcagttactattaacagctacgaaagaaagaattgacttcctacctcactatgacacc
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtcagctacttctcgtaatgttggtgttaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgttgcagtggta
gataatggaagaggaatgacctccaagcagctcaacaactgggctgtgtacaggctgtcc
aaatttacaaggcagggtgactttgaaagtgatcattcaggatatgttcggccagtacca
gtaccacgcagtttaaacagtgatatttcttatttcggtgttgggggcaaacaggctgtt
ttctttgttggacagtcagccagaatgataagcaaacctgcagattcccaagatgttcac
gaacttgtgctttctaaagaagattttgagaagaaggaaaaaaataaagaggctatttat
agtggatatattagaaaccgaaagccagctgactctgttcacattacaaatgatgatgaa
agatttctacacagtcttatcatagaggagaaggaaaaagatagctttactgctgtggtt
attacaggggtccaaccagaacacatacagtacttgaaaaattattttcatctttggaca
cgacagttaacgcatatttatcattactatattcatggccccaaaggaaatgaagtacgt
acatcaaaagaagttggacctttcaacaatattgatattgaaatttctatgtttgaaaaa
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacattgtat
ataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagacggtgtagtg
gaagggattatccggtatcatcctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttgatacttgagaaa
gcagcaagagggaaaagacctatttttgaatgtttttggaatggacgattaatcccatat
acatcagttgaagactttgactggtgtgcccctcctaagaagagagggcttgccccgatt
gaatgctacaatagaatatctggtgcgttattcactaatgacaaatttcaagtcagcaca
aataaactgacatttatggatcttgaacttaaattgaaagataagaacacactttttaca
aggattttaaatggacaggaacagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
actcgttcagatcttccctctaaaaagcaaggtccctgggcaacatactcagcaatagaa
tgggatgggaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcccctc
ttttatggaagcatagtaagattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaagttcaaattgcaatggaacctcaggccctatatgatgaaataaaaact
gtacctattgcaaagttggacagaacagttgctgagaaaactgttagaaaatatgtagaa
gatgaaatggcgaggctgcctgatagattgtctgtaacttggcctgaaggagatgaatta
ttgccaaatgaaattcgatctgctggaaccccaattggtgcgttaagaattgaaatacta
aataaaaagggggaagcaatgcaaaaacttcctggaacaagtcatggaggatcaaagaaa
ctcctagttgagcttaaagttatattacacacttcaaatggaaataaagaaatcatttcg
catatcagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatatccaa
aagttgggtaattacacgctgaaattacaagtggtcttgaatgaaagtaatgcagatacc
tacgcaggaagaccactaccatctaaagcaattaaattttctgtgaaagagggcaagcca
gagaaattttcctttggtcttctggatcctccttttcgtgttggagttccattcaatatt
cctttggagtttcaggatgaatttggtcatacgacccaactattagctgatattcagcca
gttcttgaagcaagtggtctggctttacattatgaagaaataaccaaaggcccaaattgt
gtaattcgaggtgttacagctaagggtcctgtgaactcttgtcaaggcaagaattttaat
ctgaaggttattcttccgggtttaaaagaagactcacagattttgaaaattagattgcta
cccggtcccccgcatcaattaaaagtgaaacctgattcagaaatattagttatagaaaac
ggaacagctttcccatttcaagtggaagttgtagatgaatcagacaacataacatgtcaa
ccaaaactgatcattcattgtaagtttctaggtgttccaaatcttccggtctatgttgta
gattgcagtagttctggaaccagtattttaacaggatcagcaattcaagttcagaacatt
aagaaagatcagacacttaaagcaataattgaaatacctagttgtaaagatgtgtcacct
gtggaaaagactatcaagttgcttcccagtagccatgttgcacgactacagatatttagt
gtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggt
gatgttatgcgaaatctaatttttcaaatgtatgatgaaggagaaagagaaatcaatata
acaccagccttagccgaaaagattaaagttaactggactcccgaggttaacaaagaacac
ttgctacaaggtctgcttcctgatgtacaagtgccaacatctgtgaaagatatgcgctat
tgccaggtttcattccaagatgaccatgtgtctttggaaagtgcttttacagtaagacca
cttcctgatgaccccaaacatttaaaatgtgagttaaaaggaggaaaaacagtgcagatg
ggtcaagaacttcaaggagaaatagttattatagttgcagatcagtatggaaatcagatt
tcagcattttcaccagattcattatctgctttgtcagttgctggagttgggcttgataac
tcaaatttgaaaaccactttgcaggaaaacacacaaagtataagtgtaagaggcatcaaa
tttattccaggtcctcctggaaataaagatctttgttttacttggcgtgagttttctgac
tttattcgagtgcagctgatttctggacctccagccaaacttcttcttatagactggcca
gaactaaaagagtctattccagtgattaatggaaggcaattacagaactctctcattgtt
caactttgtgatcagtgggataatccagcaccagtctccaatgttaaaataaatcttgta
aaagctaacaatttaaagctaacatcttcaaatctgcagcataaaacagatgagaagggc
agggctaatttgggagtattcactgtttttgctcctaggggagaacatactatgcaggtt
aaagccgtctataacaagagtaccatagaaggacctacaattaagttaatgattcttcca
gaccccgaaaaacccattcgtctcaatgttaaatatgacaaggatgcttcatttgtagca
gggggtgtatttactgattttatggttagtgttatttctgaagacgatagcatcatcaaa
aatattaatccagcacgtatttccatgaaaatgtggaaactgtccagcagtatgaaccga
ccaccagcaaacgcagaaacttttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctatttcagagaaaaaataattccgaacaaagtggggacatactgtatccag
tttgactttatgatggataaagcaaatatgctcaacagtgaacaggttatcattgatgtt
ttgcctaatgagcctgtgaagttggttcctgacgttccaccagctaccccagctgtttct
aatgttcgttcagttgccagtaggaccttggtcagagacttacatctcactattacggat
aattatggtaatcatactggagtaaatttgacgggtgctatagtagctaccattaaaggt
tttaatgaagaagatactgataccccactcttcatggggaaacttagaacacttgaattt
ccttttgtgaatggttctgctgaaatcacgagtctagtgctggcagaaaatagtcctgga
agggatagtactgaatattttattgtctttgagcctcgcctatcacctttactgaggaca
ttagagtcatatagcctgccatttatgttttacaatgatgttaaaaagcagcaacaaatg
gcagcacttacgagagaaaaggaccagctctctaagtccattattatgtatagaagttta
tttgaagccaacaagcagcttcttgatgaaatgaaatgccaagttgaagaagcaaaatta
aaagaggctcagctgcgaaatgaactaaaaacatataatatcgatattcctgcaacacaa
cagatacctcatattgaaggacttttgaaaagaaagttaacagaacaggaagaactaaag
aaaaagcccagaagatcgtgtactcttcctaactatactaaaggcagtggagatgttttg
ggaaagattgcacatctagcacaaattgaagatgatcgagctgcaatggttatttcttgg
catctggcaagtgacatggactgtgtggtcaccctaaccacagatgccgctcgtcggatc
tatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataggaaaact
cttccagattggaaaagacctctacctcatttccgaaatggtaaattacattttaaaccc
tttggagatccagtgtttgctcgagatttgttaacatttccagataatattgaacattgt
gaaacagtttttggtatgctgttaggagataccattattttggataatctggatgcagcc
aatcattatagaaaagaggttgttaaaattacacattgtcccacactgctgactagagat
ggagaccgaattcgaagtaatggaaaatttgggggccttcaaaataaagctcctccaatg
gataaacttcggggaatggtctttggagctccagtaccaaaacagtgtctgatcttaggt
gaacaaatagatcttcttcagcagtatcgcactgctgtgtgcaagctgggctctgtgaat
gaggatcttaacggtcagttacaataccttcacacgcctgatatgaagaagaaaaagcag
gaacttgatgaacaagaaaagagtctaaaactaatagagcaaaaacttggtatgactcct
acacggaagtgtaatgactcattgcgtcattcaccaaaggttgagctcacagaatgtcca
gttccttctaaaagaatgagaagagaatctacaagacaaaatagaagaccaaaaggtgac
ttgccaaactga
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