Nannospalax galili (Upper Galilee mountains blind mole rat): 103739068
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Entry
103739068 CDS
T03372
Symbol
Kdm2b
Name
(RefSeq) lysine demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103739068 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngi03000
]
103739068 (Kdm2b)
04121 Ubiquitin system [BR:
ngi04121
]
103739068 (Kdm2b)
03036 Chromosome and associated proteins [BR:
ngi03036
]
103739068 (Kdm2b)
Enzymes [BR:
ngi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
103739068 (Kdm2b)
Transcription factors [BR:
ngi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
103739068 (Kdm2b)
Ubiquitin system [BR:
ngi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103739068 (Kdm2b)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
103739068 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
103739068 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
103739068
NCBI-ProteinID:
XP_008837586
LinkDB
All DBs
Position
Un
AA seq
1322 aa
AA seq
DB search
MVGPGCEETPSPLSNVPGSLVGSPQRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQ
LYQGDFVHAMEGKDFNYEYVQREALRVPLVFREKDGLGIKMPDPDFTVRDVKLLVGSRRL
VDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVD
WVDNMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRG
GKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVY
TPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQR
SYLTQEYQRESMLIDAPRKASIDGFSSDSWLEMEEESCEQQPQEEEEKEEEGGGTDKTPK
PPTDGPALPTSIPSEDQENPGKKPKASSTKFLKRTLSNESEESIKSTAMPVDYPKTPSGS
PTTEVSTKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHAD
DDPSLAITGVPVVSWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCE
ACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEE
EGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRG
PGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILRRK
SDDVHLRRKRKYEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQ
QLKPGKEDKLFRKKRRSWKNAEDRLALANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSS
PTAGPSTEGAEGPEEKKKVKMRRKRRLPNKELSKELSKELNHEIQKTESSLAHENHQPIK
SEPESENEEPKRPLSHCERPHRFSKGLNSTPRELRHSLGPGLRSPPRVISRPPPSTSPPK
CIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNR
WCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDL
VLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRN
IVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEIN
LSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQK
LS
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcccagggtgcgaggagaccccaagtcctctcagtaatgtcccgggttctctg
gttgggtctccgcagcgtccgattgaccgccagagatacgacgagaacgaggacttgtcg
gacgtggaggagatcgtcagcgtccgtggcttcagcctggaggagaagctacgcagccag
ctgtaccagggggacttcgtgcatgccatggagggcaaagatttcaactatgagtacgta
caaagagaagctctcagggttcccctggtatttcgagaaaaggacggactaggaattaag
atgccggaccctgattttacagttcgagatgtcaaactcctagtggggagccgccggttg
gtggatgtgatggatgtgaacacccagaagggcaccgagatgagcatgtcccagtttgtg
cgttactatgagacaccggaggctcagcgggacaagctgtacaatgtcatcagcctcgag
ttcagccacaccaagctggaacacctggtcaagcgtcccactgtggtggacctggtggac
tgggtagacaacatgtggccccagcacttaaaggagaagcagacagaagccacaaacgcc
atcgcagagatgaagtaccccaaagtgaagaagtactgtctgatgagtgtgaaaggttgt
ttcactgatttccacattgactttggaggcacttctgtgtggtaccatgttttccgtggt
gggaagatcttttggctgatccctccaaccctgcacaatttagcactgtatgaggagtgg
gtgctgtcaggcaaacagagcgacatctttctgggagaccgcgtggaacgatgccagaga
attgagctgaaacaaggctacacatttttcattccttccggttggatccacgcagtgtat
acccctgttgattccctggtgttcggcgggaacatcctgcacagcttcaacgtgcccatg
cagctgcgcatctacgagattgaggacagaacccgggttcagcccaagttccgctaccct
ttctactatgagatgtgctggtatgtcttggagagatacgtgtactgtgtgacccagcgc
tcctacctcactcaggaataccagagagaatcaatgcttattgatgccccgagaaaagcc
agcatagacggcttctcatccgattcctggttggagatggaggaggaatcctgtgagcaa
cagccccaggaggaggaggagaaggaagaggaggggggtggtacagataagacacccaaa
ccacccaccgatggccctgccttacccaccagtatcccctctgaggatcaggagaaccca
ggaaagaagcccaaagcctcttccacgaagttcctcaagaggactttgtccaacgagtcg
gaagaaagcattaagtccacggcaatgcccgtagattaccccaagacgccctcaggctcc
cctaccactgaggtctctaccaagtggacccatctcactgagtttgaactgaagggtctg
aaagccctggtagagaaacttgaatctctcccagagaacaaaaagtgtgtccccgagggc
attgaagacccccaggccctgctggagggtgtgaagaatgtactgaaggaacatgcagat
gacgaccccagcctagccatcactggggtccctgtggtcagttggccaaagaagactcca
aagaaccgggcagtgggtcggcccaagggcaagctgggcccggcttctgcggtgaagttg
gctgccaaccggacaactgcaggagctcgcaggcgccggacgcgatgccgcaagtgcgag
gcctgtctgcggaccgagtgcggagagtgccacttctgcaaggatatgaagaagtttgga
ggccctgggcgcatgaagcagagctgcatcatgcggcagtgcattgcgccagtgctgccc
cacactgctgtgtgccttgtgtgtggagaggcagggaaggaggacacagtagaagaggaa
gaaggcaagtttaacctcatgcttatggagtgttccatctgcaatgagatcatccaccct
ggatgcctgaagattaaggaatcagagggcgtggtcaacgacgaacttcccaactgctgg
gagtgtccgaagtgtaaccatgccggcaagaccgggaaagcctacaagcaaaagcgtggc
cctggctttaagtatgcctccaacctgcccggatccctgctcaaggagcagaagatgaac
cgggacaacaaggaagggcaggagcctgccaaacggaggagtgagtgtgaggaggcgccc
cggcgcaggtcagacgaacaccccaagaaggtcccccctgatggcatcctacgccgaaag
tctgacgatgtgcacctgaggaggaagcggaaatacgagaagccccaagagctgagtgga
cgaaagcgagcctcgacgcttcaaacgtcccccggttcctcctctcacctctcgccgagg
ccccctctaggcagcagtctcagcccttggtggagatccagtctcacttacttccagcag
cagctaaaacctggcaaagaagataagcttttcaggaaaaagcggaggtcttggaaaaac
gctgaagaccgactagcactggccaacaagccccttcggcgcttcaagcaggaaccagag
gacgatctacctgaagcaccccccaagacccgggagagtgaccactcacgctctagttca
cccaccgctgggcctagcactgagggagctgaaggcccagaggagaagaagaaagtgaag
atgcgcaggaaacggcggcttcctaacaaggagctgagcaaagagctaagtaaggagctc
aaccatgagatccaaaagacagagagcagcctggcccatgaaaaccaccagcccatcaag
tcagaacctgagagtgagaatgaggaacccaaacggcccttgagccactgtgagcgaccc
caccgcttcagtaaggggctcaacagcaccccccgggagctgcggcactcactggggcct
ggcctgcgcagcccaccccgtgtcatctcgcggcccccaccctctacatccccacccaag
tgcatccagatggagcgtcacgtgatccgaccaccccctatcagccccccacctgactcg
ctgcccctggatgatggggcagcccacgtcatgcacagagaggtgtggatggccgtcttc
agctacctcagccatcaagacctgtgtgtctgcatgcgggtctgcaggacatggaaccgc
tggtgctgtgataagcggttgtggacccgcattgacctgaaccactgcaagtctatcaca
cccctgatgctgagtgggatcatacggcgccagcctgtctcccttgacctcagctggacc
aatatctccaagaagcagctgagttggctcatcaaccggttgcctgggctccgagacttg
gtgctgtctggctgctcatggattgctgtctcagccctctgtagctccagttgtccattg
ctccggaccctggatgtccagtgggtagaaggactaaaagatgcccagatgcgggatctc
ctatctccacctacagacaacagaccaggtcagatggacaatcggagcaagctccggaac
attgtagaactgcgcctagctggtctggacatcacagatgcctccctgcggcttatcatc
cgccacatgcccctactctccaagctccacctcagttactgtaaccatgtcaccgaccaa
tctatcaacttgctcactgcagttggcaccaccacccgggactctctgacagagatcaac
ctgtcagactgcaataaagtcactgatcagtgcctgtccttctttaaacgctgtggaaat
atctgtcatattgacctgaggtactgcaagcaagtcaccaaggaaggctgcgagcagttc
atagctgaaatgtctgtcagtgtccagtttgggcaggtggaagaaaaacttctgcaaaaa
ctaagttag
DBGET
integrated database retrieval system
