Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141: RG1141_CH20870
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Entry
RG1141_CH20870 CDS
T03208
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ngl
Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
Pathway
ngl03030
DNA replication
ngl03410
Base excision repair
ngl03420
Nucleotide excision repair
ngl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RG1141_CH20870
03410 Base excision repair
RG1141_CH20870
03420 Nucleotide excision repair
RG1141_CH20870
03430 Mismatch repair
RG1141_CH20870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngl03032
]
RG1141_CH20870
03400 DNA repair and recombination proteins [BR:
ngl03400
]
RG1141_CH20870
Enzymes [BR:
ngl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RG1141_CH20870
DNA replication proteins [BR:
ngl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RG1141_CH20870
DNA repair and recombination proteins [BR:
ngl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RG1141_CH20870
NER (nucleotide excision repair)
GGR (global genome repair) factors
RG1141_CH20870
MMR (mismatch excision repair)
DNA ligase
RG1141_CH20870
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RG1141_CH20870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
5_3_exonuc
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CDN54426
LinkDB
All DBs
Position
complement(2029321..2031477)
Genome browser
AA seq
718 aa
AA seq
DB search
MSAEQTPVENLTEEQAAAELAYLAAEIARNDELYHGHDAPQISDADYDGLKRRNDAIEKR
FPQLIRADSPSIRVGAAPLPTFAAITHSRPMLSLDNTFSDDDVRDFVSSVYRFLGQLPDG
SIAFTAEPKIDGLSMSIRYENGRLVNAATRGDGTTGENVTENIKTIKEIPNRLPAGVPDV
VEVRGEVYMTKSDFLALNEKMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRNLKFFAYAW
GEMSEMPADTQMGMVEKFREWGFPVNPLMKRLHAVEDIIAHYKDIGLKRPDLDYEIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTHVERIDIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNEDYIKGLGNSGEPIREPDHDIRVGDTVIVQRAGDVIPQVLDVVMEKRP
PEAVPYEFPKKCPVCDSHAVRERNEKTGKLDSVTRCTGGFVCRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFEAEDDALKIRTAPDIFTLKRRQEASTLTKLENIEGFGKVSVKKLFDA
IDERREIALHRFIYALGIRHVGETTAKLLARAYGTYEVFAKAMDDAAELSGDAWDDLNNI
EGIGEVMARAIVEFFKEPRNVEVITRLREEVTPQAAEQPVASNSPIAGKTVVFTGSLEKF
TRDEAKARAESLGAKVAGSVSKKTDYVVAGPGAGSKLDKARELGVQVMDEDEWLAFIA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgaacagacgcccgtcgaaaacctgaccgaagaacaggccgcagccgagctc
gcctacctggcggcggagattgcccgcaatgacgagctctatcacggccatgacgcgccg
cagatttcggatgcggattacgatgggctgaaacggcgcaacgatgcgatcgaaaaacgg
tttccgcagctgatccgggccgacagcccgtcgatccgggtcggtgcggcgcccttgccg
acgtttgcggcgatcacccactcgcggccgatgctgtcgctcgataacactttctcggac
gacgatgtccgcgatttcgtctcttccgtctaccgtttcctcggccagctgccggacggc
tcgattgcgtttaccgccgaaccgaagatcgacgggctttccatgtcgatccgttacgag
aacggccggctggtgaatgctgccacccgtggcgacggcacgaccggcgaaaacgtcacc
gagaacatcaagaccatcaaggaaatccccaatcgcctgccggccggcgtgcccgatgtc
gtcgaggtgcgtggcgaggtttatatgacgaaaagcgacttcctggcgcttaacgagaag
atggcggcggaaggcaagcagacctatgtcaacccgcgcaatacggccgccggctcgctg
cgccagctcgacgccaaggtgaccgcaagccgcaacctgaaattcttcgcctatgcctgg
ggcgagatgtcggagatgccggccgacacccagatgggcatggtcgaaaaattcagggaa
tggggttttccggtcaacccgctgatgaaacgcctgcacgcggtcgaggatatcatcgct
cattacaaggatatcggcctcaagcgcccggatctcgactacgagatcgatggtgtcgtc
tacaaggtggacaggctcgacctgcaggcccggctcggttttcgctcgcgttcgccgcgc
tgggccacggcgcataaattcccggcggaacaggcctttactcatgtggagcggatcgac
atccaggtcggccgcaccggagcgctgacgccggtcgcgcgcctgacgccggtcaccgtc
ggcggcgtggtcgtcaccaatgcgacgctccacaacgaagactatatcaaggggctcggc
aattccggcgaaccgatccgcgagccggatcacgatatccgcgtcggcgacaccgtcatc
gtccagcgagcaggggatgtcatcccgcaggtgctcgacgtggtgatggagaagcgtcct
ccggaagccgtgccctacgaattcccgaagaaatgccccgtctgcgacagtcatgcggtg
cgcgagcgtaacgaaaagaccggcaagctcgattcggtcacccgctgcaccggcggtttc
gtttgccgtgcgcaggcgaccgagcacctcaaacatttcgtgtcgcgcaacgccttcgat
atcgaaggcctcggctccaagcagatcgatttcttcttcgaggcggaagacgacgcgctg
aagatccgcactgcgcccgacatcttcacgctgaagcggcggcaggaggcctcgacgctt
accaaactcgaaaatatcgagggcttcggaaaagtcagcgtcaagaaattgttcgatgcg
atcgacgagcggcgcgagatcgcgctgcaccgcttcatctacgcgctcggcatccggcac
gtaggcgagaccaccgccaagctgcttgcgcgcgcctatggcacctacgaggtatttgcg
aaggccatggacgatgcggccgagctttccggcgacgcctgggacgatttgaacaatatc
gagggtatcggcgaggtgatggcgcgcgccatcgtcgagttcttcaaggagccgcgcaat
gtcgaggtcattacccggcttcgcgaagaggtgacgccgcaggccgccgaacagccggtc
gcctccaacagcccgatcgccggcaagacggtggtcttcaccggctcgctcgaaaaattc
acccgcgacgaggccaaggcgagggcggaaagccttggcgccaaggtggccgggtcggtc
tccaagaagaccgactatgtggtcgcgggtcctggcgccggctccaagctcgacaaggcg
agggaactcggcgtccaggtgatggacgaggacgaatggctcgcctttattgcgtga
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