Nonomuraea gerenzanensis: LCN96_51825
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Entry
LCN96_51825 CDS
T07782
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03030
DNA replication
ngn03410
Base excision repair
ngn03420
Nucleotide excision repair
ngn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCN96_51825 (ligA)
03410 Base excision repair
LCN96_51825 (ligA)
03420 Nucleotide excision repair
LCN96_51825 (ligA)
03430 Mismatch repair
LCN96_51825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngn03032
]
LCN96_51825 (ligA)
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_51825 (ligA)
Enzymes [BR:
ngn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCN96_51825 (ligA)
DNA replication proteins [BR:
ngn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCN96_51825 (ligA)
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCN96_51825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCN96_51825 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCN96_51825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCN96_51825 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
CwsA
BRCT_2
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
UBU12666
LinkDB
All DBs
Position
11130345..11132411
Genome browser
AA seq
688 aa
AA seq
DB search
MTETPPITTLPDDTAYAEAVQLAVDSAAAYYADGTSTLDDDAYDRLVRGIQAYEEEHPES
VLPSSPTGKVAGGAVAGDVPHTVPMLSLDNVFGAEQLADWAAGLERRLGRPVTAWSVEPK
LDGLAISARYRHGRLAQLVTRGDGTAGEDVSHAIGTVVGLPDRLADAVTVELRGEVMMTT
SQFEEACAKRQAHDGTTFANPRSAAAGTLRAQDRPYVCELTFFGYGALPAPGDESDLAVR
LRELPHSQIMEWVAAQGVQTTAATSVAGIVAQTLDQVQARVGEIAAARAELPFGIDGIVI
KCDLAGDQAEAGFSSRAPRWAVAYKLPATEKITKLLDVTWNTGRTGVIAPRAVLEPVELD
GSIVTYATLHNVADITRRGLMLGDSVTVYKAGDVIPRVEAPVVHLRTGDERPIPIPEVCP
MCGDEIDRSQERWRCVRGRDCQAISSVIYAVERDTLDIEGLASNRIKQMFENGLIADFAD
LFFLTREQLLKLERMGETSTDNLLAAIEQAKTRPLSRVFAALGVRGTGRSMSRRIARHFA
TMDNIRAADAEAIQQVDGIGPEKAPVVVEELAELAPLIDKLVRAGVNMVEPGATPPSDDP
KAPAEDLPLSSMSVVVTGTMTGPLAALTRNEVNELIERAGGKSSSSVSAKTSLLVAGEKA
GSKRAKAESLGVRIVSPEEFAEQVGAFL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagacgccccccatcaccacgctgcccgacgacacggcctacgccgaggccgtc
cagctcgccgtcgactccgccgcggcctactacgccgacggcacctcgacgctcgacgac
gacgcctacgaccggctggtgcgcggcatccaggcgtacgaggaggagcaccccgagtcg
gtgctgccgtcctcgcccaccgggaaggtggccggcggggccgtggcgggcgacgtgccg
cacacggtgccgatgctgagcctcgacaacgtcttcggcgccgagcagctcgccgactgg
gcggcggggctggagcgccggctcgggcggccggtcacggcgtggagcgtggagcccaag
ctcgacgggctggcgatctctgcccgctaccggcacggccggctggcgcagctcgtcacg
cgcggcgacggcaccgccggcgaggacgtctcacacgccatcggcaccgtcgtcggcctg
cccgaccggctcgccgacgccgtgacggtggagctgcggggtgaggtcatgatgaccacc
tcgcagttcgaggaggcgtgcgccaagcggcaggcgcacgacggcaccaccttcgccaac
ccgcgcagcgccgccgcgggcacgctgcgcgcgcaggaccggccttacgtgtgcgagctg
accttcttcggctacggcgcgctgcccgcgcccggcgacgagtccgacctggccgtgcgc
ctgcgcgagctgccgcacagccagatcatggagtgggtcgccgcgcagggcgtgcagacc
acggccgccacctccgtggccggcatcgtggcgcagacgctcgaccaggtgcaggcccgg
gtcggggagatcgcggcggcgcgggccgagctgccgttcggcatcgacggcatcgtgatc
aagtgtgatctggccggtgaccaggcggaggcggggttcagctcgcgggcgccgcggtgg
gcggtggcgtacaagctgcccgccaccgagaagatcaccaaactgctcgacgtgacgtgg
aacaccggccgcaccggcgtcatcgccccgcgcgccgtgctggagcccgtcgagctcgac
ggcagcatcgtcacctacgccaccctgcacaacgtcgccgacatcacccggcgcggcctg
atgctgggcgacagcgtgaccgtctacaaggcgggcgacgtcatcccccgggtcgaggcg
ccggtggtgcacctgcgcacgggcgacgagcggccgatcccgatccccgaggtctgcccg
atgtgcggggatgagatcgatcggtcgcaggagcgctggcggtgcgtgcgcgggcgcgac
tgccaggcgatctcctccgtcatctacgcggtcgaacgcgacacgctcgacatcgagggc
ctcgcgtccaaccgcatcaagcagatgttcgagaacggcttgatcgccgacttcgccgac
ctgttcttcctgacccgcgagcaactcctcaagctggagcgcatgggcgagaccagcacc
gacaacctcctggccgccatcgagcaggccaagaccaggccgctcagcagggtgttcgcg
gctctcggggtgcgcggcaccggccgttcgatgagccgccgcatcgcccgccacttcgcc
accatggacaacatccgcgcggccgacgccgaggcgatccagcaggtcgacggcatcggg
ccggagaaggcgccggtcgtggtggaggagctggccgagctcgccccgctgatcgacaag
ctggtccgcgcgggagtcaacatggtggagcccggcgccaccccgccgagcgacgacccg
aaggccccggccgaggacctgccgctcagctcgatgtcggtggtcgtgaccggcacgatg
acggggccgctggcggcgctgacgcgcaacgaggtgaacgagctgatcgagcgggccggc
ggcaagtcctcctccagcgtctccgccaagacctcgctgctggtcgccggggagaaggcg
ggctcgaagcgggccaaggccgagtcgctgggggtgcggatcgtgagcccggaggagttc
gccgagcaggtcggcgcgttcctctga
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integrated database retrieval system
