Nocardia gipuzkoensis: LTT66_22440
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Entry
LTT66_22440 CDS
T07945
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03030
DNA replication
ngp03410
Base excision repair
ngp03420
Nucleotide excision repair
ngp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTT66_22440 (ligA)
03410 Base excision repair
LTT66_22440 (ligA)
03420 Nucleotide excision repair
LTT66_22440 (ligA)
03430 Mismatch repair
LTT66_22440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngp03032
]
LTT66_22440 (ligA)
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_22440 (ligA)
Enzymes [BR:
ngp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LTT66_22440 (ligA)
DNA replication proteins [BR:
ngp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LTT66_22440 (ligA)
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LTT66_22440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LTT66_22440 (ligA)
MMR (mismatch excision repair)
DNA ligase
LTT66_22440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LTT66_22440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DUF7575
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
UGT66062
LinkDB
All DBs
Position
4952471..4954585
Genome browser
AA seq
704 aa
AA seq
DB search
MSDSDSAAAPATAEQRVQWQRLADEVREHQFRYYVRDAPTISDGEFDALLLRLQTMEDEH
PDLRTPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFDVDELRAWAARVEAETGPDLHYL
CEVKIDGVALNLVYRDGRLVRGATRGDGRTGEDVTLNARTIDDIPGELTPSDEFPFPEVL
EVRGEVYFRLEDFETLNAAIAAEGKPPYANPRNTAAGSLRQKDPSVTARRRLRMICHGFG
RIEGYTPTSQYEAYRALAAWGLPVSEHTRRVQGIDAVIERVAYWGEHRHDIEHEIDGQVI
KIDETALQRRLGSTSRAPRWAIAYKYPPEEATTKLLNIQVNVGRTGRVTPFAVMEPVSVA
GSTVAMATLHNAAEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDARPADAREFVMPTHCP
ECGTELRPEKEGDADIRCPNQQFCPAQLRERVYHVAGRGAFDIEALGYEGAIDLLKSHAI
TDEGDLFDLDEASLLTTSLYANKNGSLSANGKRLLENLAVAKDRPLWRVLVGLSIRHVGP
TAARALAAEFGSLDRIQEASLEELAAADGVGPTIAAAVAEWFTVEWHRAVVAKWRAAGVR
MEDERDESIERNLAGLSIVVTGSLQGFTRDGAKEAILVRGGKAASSVSKKTAFVVIGDAP
GSKAAKAEELGVPILDEEGFRRLLAGGPEAVAPETAAEDADAEE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacagcgacagtgcggcggccccggcgacggcggagcagcgggtccagtggcag
cgactcgcggacgaggtccgtgagcaccagttccgctactacgtccgggatgcgccgacc
atctccgacggtgagttcgacgcgctgttgctgcggctgcagaccatggaggacgagcac
ccggacctgcgcacgccggattcgccgacccagctcgtcggcggcggtttcgcgaccgat
ttcaccgcggtcgaccacctcgagcggatgctgtcgctggacaacgtgttcgacgtcgac
gagctacgcgcctgggccgcccgggtggaggcggagaccggcccggacctgcactatctg
tgcgaggtgaagatcgacggcgtcgcgctgaacctggtctatcgcgacgggcggctggtg
cgcggcgccacccgcggcgacggacgcaccggtgaggacgtgacgctcaacgcgcgcacc
atcgacgacatccccggcgagctgaccccaagcgacgagttccccttcccggaggtgctc
gaggtccgcggcgaggtgtacttccggttggaggatttcgagacgctcaacgccgccatc
gcggccgagggcaagccgccctacgccaacccgcgcaacaccgcggccggttcgctgcgt
cagaaggatccgtcggtcaccgcgcggcgcaggctgcgcatgatctgccacggcttcggc
cgcatcgaggggtacacgccgacctcgcagtacgaggcgtatcgcgcgctcgccgcgtgg
ggtctgccggtgtccgagcacaccaggcgggtgcagggcatcgacgccgtgatcgagcgg
gtcgcctactggggcgagcaccgccacgacatcgagcacgagatcgacggccaggtgatc
aagatcgacgagaccgcgctgcaacgccgtctcggctcgacctcacgcgctccgcgctgg
gcgatcgcctacaagtacccgcccgaggaggcgacgaccaagctgctgaacatccaggtg
aacgtcggccgcaccggccgggtgacgccgttcgcggtgatggagccggtgtccgtcgcg
ggatccacggtcgcgatggccaccctgcacaacgcggccgaggtcaagcgcaagggtgtg
ctgatcggcgacacggtcaccatccgcaaggcgggcgatgtcatccccgaggtgctcggt
ccggtggtggatgcccggcccgcggacgcgcgcgagttcgtgatgccgacccactgcccc
gagtgcggcaccgaactgcgccccgagaaagagggcgacgccgacatccgctgccccaac
cagcagttctgtccggcacagttgcgcgagcgcgtctaccacgtggcgggccgtggcgcc
ttcgacatcgaggcgctcggctacgaaggtgcgatcgatctgctgaagtcccacgccatc
accgacgagggtgacctgttcgatctggacgaggcgtcgctgctgaccacctcgctgtac
gcgaacaagaacggcagcctctccgccaacggcaagcggctgctggagaacctggccgtc
gccaaggaccggccgctgtggcgggtgctggtcggcctgtccatccggcacgtcggcccc
accgcggcgcgggcgctggccgccgaattcggcagcctggaccgcatccaggaggcgtcg
ctcgaggaactggccgcggccgacggcgtgggccccaccatcgccgccgcggtggcggag
tggttcaccgtcgagtggcaccgcgccgtggtggcgaagtggcgcgccgcgggtgtgcgg
atggaggacgagcgcgacgaatccatcgagcgcaatctggcgggcctgtccatcgtggtg
accggctcgctgcaaggcttcacccgcgatggcgccaaggaggcgatcctggtgcgcggc
ggcaaggccgcgagctcggtatccaagaagaccgcgttcgtggtgatcggcgacgcgccc
ggctccaaggccgccaaggcggaggaactcggtgtgccgatcctcgatgaggaggggttc
cggcggctgctggcgggcggccccgaagcggtcgcgcccgagacggccgcggaggacgcc
gacgccgaggagtga
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