Neoarius graeffei (lesser salmon catfish): 132866720
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Entry
132866720 CDS
T10798
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132866720 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132866720 (lig4)
Enzymes [BR:
ngra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132866720 (lig4)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132866720 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
132866720
NCBI-ProteinID:
XP_060755485
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All DBs
Position
18:complement(36282853..36290657)
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AA seq
918 aa
AA seq
DB search
MEGPSKGERREETCKSDLTSKTSVAAQVPFIDLCTVLENIQKAKHRPDKAKCLKDFIDSW
RRFHAALHKDNPNTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTSSNAESGDFALTAYFVLKKRCTSRGTLSIKEVNDFLDSVAINNSSKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQGFHPDAPELYNVTTDLDKVCR
QLHDPSISLNEVSISLFSAFKPMLAAVAKIRQVEKQMGNQPFYIETKLDGERIQLHKDGD
VYKYYSRNSFEYTQQFGASPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPKTETFIQKG
SKFDIKRLVDDSDLQTCFCVFDVLLVNDQKFGNEPLRKRYDTLQTVFTPVKGRIQLVQNT
EAKTRDEVIHFLNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGEKPTVFHTVCRIGSGYTMKELYELGLKLAKHW
KVFRKSSPPAGILCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIEKIRE
DKEWYECMTLDELNQFRDKASGKLASRHLHLQEDEPEKKKRKFTTKAKKTIGIVDHFKSQ
DLSTVTKETDMFEDVEFCVMSGSNTHSKAELEKAVARCGGIVVQNPGKDTYCVIAGVENV
RVKNLIGSDEHDVVWASWLLECLDKKQVLPWQPRHMIHMSPSTREHFAKEYDCYGDSYYV
DTDEQQLKEVFSRMGPVDLDAVSVASIEQKYGWDDLPTSMFRPYRVYFDRCADISDPESL
IKGTCLDFRALEFRFHGGTVVERLEEGISHVVMADEERLLDLRTHRRLFTKKFKLVRETW
VTDSIKAGHILNDNDYLM
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggagggcccgtccaaaggtgagagaagagaggaaacatgcaaaagtgacttgacatct
aaaacatctgtggctgcccaagtgccatttattgacctgtgcactgttctcgagaatatc
cagaaagccaaacatcggccagacaaggccaaatgcttaaaggatttcatagattcatgg
agaaggtttcatgcagctcttcacaaagataatccgaataccacagattcattttaccca
gccatgcgtcttattgtgcctccttttgaaagagagagaatggcctatggtatcaaagaa
aacatgctagccaaactctacattgaggtcttaggtcttccaaaatcagggccagaggca
aataaacttctcaattacagagcccctacttcatccaatgcagaatctggagactttgcc
cttacggcttactttgtcctcaaaaagagatgcacaagccggggtactctgagtatcaaa
gaggtcaatgatttcttggactcagtagcgatcaataattccagcaaacagaaagacctt
gtgaagaaaagccttttacatttaattactcaaagctcagctttggaacagaagtggctt
attcgtatgatcctgaaagacatgaaacttgggattagcaaggagactgttctccagggt
tttcatccagatgctccagagctctacaatgtcactactgacttggacaaggtctgcagg
cagctacatgacccatctatttccttgaatgaggtatccatcagcctgttttctgccttc
aaacccatgctggcagctgtcgccaagatccgccaagtggagaaacagatggggaaccag
cccttctatatcgagaccaagctggacggtgagcgcattcaacttcataaggatggggat
gtgtacaagtactacagtcgtaattcattcgaatacacgcaacagtttggggcctcacca
ctagagggttccctcacaccatacatccataatgtctttaaatctcatgttgtcaattgc
attttggatggagagatgatggcttataaccccaaaacggagaccttcatacaaaaaggc
agcaaatttgatatcaagcggttggtggatgattctgatttacagacatgcttttgtgtg
tttgatgtcctacttgttaatgatcagaagtttggaaacgagcctctcaggaagcgttat
gacactctccagacagtcttcacacccgtcaaaggccggatccagctggtacagaacact
gaagccaaaaccagggacgaagtgatacatttcctcaatgaagctattgacaaccgtgaa
gaaggcatcatggtcaaagaccccatgtccatctacaagccagataaacgtggtgaaggg
tggctgaagatcaaacctgaatacgttgatggtctgatggatgaattggatttgctaata
gtgggaggctactgggggaaaggcagacggagtggaatgctgtcccactttctctgtgct
gttgctgaaacgccgagtcctggagagaagccaacagtgttccatacagtctgtcgaatt
ggatcaggctacaccatgaaagagctctatgagcttggcctgaaactggccaaacactgg
aaggttttccgcaagagtagccctccagcaggcattttgtgtggaacagaaaagccagag
gtttacattgagccaagaaactccgtgatcattcaagtcaaagcagcagagattgttact
agtgacatgtacaaaactaactgcactctgcgattccccaggattgagaagatccgagag
gacaaagaatggtatgagtgcatgaccttagatgagctaaatcagttccgtgataaagcc
tcaggtaagctggcgtccaggcatcttcacctccaggaagacgagccggagaagaagaaa
cgcaaattcacaaccaaggccaaaaagaccattggcattgttgaccacttcaaatctcaa
gacctgtccactgtcaccaaagagaccgacatgtttgaagatgtggaattctgtgtgatg
agcggaagcaatacacattccaaagctgagcttgaaaaggctgtggcccgttgcggaggc
attgtggtccagaaccctggaaaggacacatactgtgtgatagcaggtgttgagaatgta
cgggtaaagaacctcattggttcagacgaacatgacgtagtatgggcttcctggctcctg
gaatgtctggacaagaaacaggtgttaccatggcaaccacgacacatgatccacatgtcc
ccttccacaagggaacactttgctaaagagtacgattgctatggagacagttactacgtc
gacactgatgagcagcagctgaaggaagtcttcagcagaatgggacctgttgatctggat
gcagtatctgtagcttcaatcgagcagaagtacggctgggatgacttgcccaccagcatg
ttcagaccttatcgtgtgtactttgatcgatgtgctgatatcagtgatccagaaagtctt
attaagggtacatgtctggactttcgagctctggagtttcgctttcatgggggcacggta
gtagaaagactagaagaaggcatttcacatgtagtcatggcggacgaagagagattattg
gacttaaggacacacagacgcctctttacgaagaagtttaagcttgttcgagaaacatgg
gtgactgattctattaaagcagggcacatacttaatgacaacgattaccttatgtaa
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