Neoarius graeffei (lesser salmon catfish): 132868780
Help
Entry
132868780 CDS
T10798
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132868780 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132868780 (eftud2)
Spliceosome [BR:
ngra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132868780 (eftud2)
Complex C
U5 SnRNP specific factors
132868780 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
132868780
NCBI-ProteinID:
XP_060757935
LinkDB
All DBs
Position
20:complement(51805301..51903889)
Genome browser
AA seq
972 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEDVEAEDRDAAEADEDEEDEDQVDGDEDGGGGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLTEQELPVTVYDMEFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVG
IKSTPVTLVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTE
RLIKHVVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYSTDESLVV
SPLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKA
PNSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVC
NRFFGEFTGFVDMCVQHIPSPHGGARAKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIE
VNRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DEPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtacgacgaattcggtaactacatcggaccagaactggactccgat
gaagatgaagacgtagaggcagaggacagagatgcagctgaggcggatgaggatgaggag
gatgaagaccaggttgacggtgatgaagatggtggtggcggcatggaggtagttttgcac
gaggataagaagtattatccgactgcagaggaagtctatgggcctgaagtggagaccatc
gtccaagaagaggacacacaaccacttacagagcctattatcaagcctgtgaagacgaag
cagttcactctgaccgagcaggagctgccagttacagtttatgacatggaatttcttgct
gatttaatggacaactccgagctgattagaaacgtcacgctgtgcggccatttgcaccac
ggcaagacctgttttgtggactgcctgatcgaacagactcatccggaaatccgtaagcga
gatgacgcagatctgcgctatacagatattctgttcaccgaacaagagagaggagttggt
attaagagcacacctgtgacactggtacttcctgactcaagagggaaatcctacctgttc
aatattatggacactccaggtcatgtgaacttctctgacgaggttacagcaggaatcagg
ctttcagatgggattgtgttgttcatcgacgctgctgagggggtgatgctgaacacagag
cgtttgataaaacacgtcgtgcaggagcgactggccataaccatctgcatcaacaaaatc
gaccggctgatcttggagctcaaacttcctcccactgacgcctactacaaactgcgccac
attgtcgatgaggtcaatggcatgctcagcacgtattcaactgacgagtctctagtggtg
tctcctctgctaggcaacgtatgcttcgcttcctcacagtacagcatctgctttactctc
gggtctttcgccaagatctactccgatacctatggtgacataaactacaacgagtttgca
aagagactctggggagacatctacttcaaccccaagacgaggaagttcaccaaaaaagcc
cccaacagtaactcgcagcgcagctttgtggagttcgtcctggagccgctctacaagatc
ctctcgcaggtggtcggggatgtggacacttcgctgccacgtgtactggatgaactgggg
atccacctgaccaaagaggagctcaaactcaacatccggcctctgctgcgactagtctgc
aaccgcttctttggggagtttacaggctttgtggacatgtgcgtgcagcacatcccgtct
cctcatgggggagccagagccaagatcgaacacagctatacaggaggcctggactccgac
ctgggggaggccatgacggagtgtgaccctgatggtccgttaatgtgtcacaccacgaag
atgtacagcacagatgacggagtgcagttccacgcctttggtcgggttctgagcggaacc
ctgcaggcggggcagccggtgaaagttctaggagagaattacacactggaggatgaagag
gactcgcagatctgcaccgtcggacgcctctggatctctgtagcccggtatcagattgag
gtgaatcgggtccctgctggcaattgggtgttaattgaaggctgtgaccagcccattgtg
aaaacggccaccatcacagagcctcggggtaacgaagaggctcagatcttcaggccgctg
aaattcaacactgcttccgtcattaaaattgccgtggagcctgtgaatccctctgagctg
ccgaagatgttggacggcctgaggaaagttaataagagctacccatctcttacaacaaag
gtggaggagtctggagagcatgttatcctgggtacaggtgagctctacctggactgcgtc
atgcacgacctgaggaagatgtactccgagatcgacatcaaggtagctgaccctgtagtg
accttttgcgagacagtggtggaaacatcctctctcaagtgctttgctgaaacacccaat
aaaaagaacaagatcacgatgattgctgagcctctggagaaaggccttgctgaagacatt
gagaatgaagtggtgcagattacatggaacagaaagaagttgggagagttcttccagacc
aagtatgactgggatttgctggcagctcgttctatctgggcttttggacccgacaccact
ggacccaacatcttagtagatgacacactgccgtctgaggtggacaaagctctgcttggc
tcagtgaaggacagcatcgttcagggcttccagtggggaactagagaaggtcctctgtgt
gatgaacccattcgtaacgtgaagtttaagatcctggatgcggtcatagctcaggagccg
ttgcaccgaggaggcgggcaggtcattccgacagcaagaagagtcgtatattccgccttc
ctcatggctacacccaggctgatggagccctattactttgtggaggttcaggctcctgct
gattgtgtatctgctgtttacactgtactggcacgcaggagaggtcatgtgacacaggat
gcaccaatccccggatcacctctgtacaccattaaggctttcattcctgcaattgactca
tttgggttcgagactgatctgcgtacacacacacagggacaggccttcgcactcagcgtg
ttccaccactggcagattgttcctggtgatcctctggacaagagcatcgtgattcggcca
ttggagcctcagccagcgcctcatctagccagagagttcatgatcaaaactcgtcgacgc
aagggtttgagcgaggacgtcagtatcagcaagttcttcgacgatcctatgttgttggag
ctggcgaagcaggatgtggtgttgaactaccccatgtga
DBGET
integrated database retrieval system
