Neoarius graeffei (lesser salmon catfish): 132883372
Help
Entry
132883372 CDS
T10798
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132883372 (slit1a)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Axon guidance molecules
132883372 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
LRRCT
EGF_TEN
LRR_1
hEGF
LRR_9
LRR_14
EGF_Teneurin
EGF_DL_JAG
JAG1-like_EGF2
LRR_EndoS
EGF_3
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
132883372
NCBI-ProteinID:
XP_060772897
LinkDB
All DBs
Position
3:47859312..48066155
Genome browser
AA seq
1573 aa
AA seq
DB search
MHCFQQKDVCSSSSGFVNGNNLLRKGNQRSLRSCGSVMPMRGWRAWKWALFLCGALFAHR
ATACPALCTCSGTTVDCHNLGLKSIPRNIPRNTERLELNGNNFTRINRNDFSGLKYLRVL
QLMENQIGAVERGAFDDMKELERLRLNRNQLYQLPELLFQKNAALSRLDLSENFIQAIPR
KAFRGATDIKNLQLDKNHIGCIEEGAFRALRGLEVLTLNNNNISAIPVSSFNHMPKLRTF
RLHSNNLNCDCHLSWLSQWLRQRPTLGLFTQCSSPPQLRGINVAEIQKHEFSCSGHSDSS
SPHTCSLASGSCPTMCTCSNNIVDCRGKGLTAIPANLPENMAEIRLEQNGIRSVPPGAFS
PYKKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGNKITELPKGVFDGLYALQLLLLNA
NKIHCVRANAFQDLQNLSLLSLYDNKIQTLAKGTFSSLRAIQTLHLAQNPFICDCNLKWL
ADYLRANPIETSGARCASPRRLANKRIGQIKSKKFRCSAKEQYSIPGTEDTRLNNECNNE
PVCPAKCRCESNVVDCSNLRLTKIPEHIPASTTELRLNNNEITSLEANGAFKSLTQLKKI
NLSNNKIAEIEDGAFEGASSVSELHLTANQLDSVRSGMFRGLEGLRMLMLRNNRISCIHN
NSFTGLYNVRLLSLYDNQLTTISPGAFDTLQTLSTLNLLANSFNCDCRLAWLGDWLRTRK
IVTGNPRCQRPAFLKEIPLQDVALPDFRCEDGQEDASCLPRPQCPSECTCLETVVRCSNK
HLHSLPKGIPRNVTELYLDGNQFSVVPKELATFKYLQLVDLSNNKISTLTNSSFANMSQL
TTLILSYNALRCIPTLAFAGLRSLRLLSLHGNDISEFPDGIFSDAVSLSHLAIGANPLYC
DCRLRWLSDWVKTGYKEPGIARCIGPPEMEGKLLLTTPAKKFECLGEADPSVLAKCNPCL
SNPCMNHGTCQTDSTELYKCTCIEGFKGKNCETALNACISNPCANGGACQVTEGEDSYIC
SCPLGFEGQRCEINIDDCEDNDCENGATCKDGVNNYTCLCAPYYTGEMCEELEDLCTPER
SPCKHQSTCLITAAGPKCVCVPGYVGDDCSVDYDDCQEHKCQNDADCLDEINGYSCVCTR
GYSGQLCEVPPAPLSPCQLADCQNDAPCVERAGRALCQCLPGFGGPRCEKLVSVNFVDRD
SYLLLSDLKNWPQANITLQVSTAEDNGILLYNGDNDHIAVELFQGHVKVSYDPGSQPGHA
IYSTETINDGQFHTVELVTFDQMVNLSIDGGVPTTMGSVGIVRPLNGDTPLYVGGRGPAQ
IPRSTAGMPVDVHASIAPHAWHIQNGSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEP
CRKIYCLHGICQPDAALGPVCHCQPGWSGQHCDQPTANPCQGNKCVHGKCIPLDMQSYRC
ECQEGYRGALCNQQGELFNPCRRLQCKHGRCQISDSGDAYCHCENGYTGELCDQESECRG
EQVRDFYQVQRGYAICQTTRMLSWVECSGACQPGACCASQRTKRRKYTFECSDGTSFSEE
VEKSIKCGCVGCM
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgcattgctttcagcagaaggacgtctgcagcagtagcagcggctttgtaaacggaaac
aatctcttaaggaaaggcaatcaacggagtttacggagctgtggatcagtcatgcccatg
agaggctggagggcatggaagtgggcactgttcctgtgtggcgccctgttcgcccaccgt
gccactgcttgcccggctctgtgcacctgcagcggcaccaccgtggactgccacaacctg
gggctcaagagcattcccaggaacatcccgaggaacacggagcgactggaactgaatgga
aataacttcacccgcatcaacagaaatgattttagtggactcaaatacctccgtgttctg
cagctgatggagaaccagattggagccgttgagcggggagcctttgatgacatgaaagaa
ctggagagactacgtctaaataggaaccaactctaccagctgccagagctactgttccag
aagaatgctgctttgtcacgactagacctcagtgagaacttcatccaggccattcctcgc
aaggccttccgtggagctacagacatcaagaaccttcagttggacaaaaatcacatcggt
tgtattgaggaaggagcattccgggcacttcgagggttggaggttttaacactaaacaac
aacaacatcagtgccataccagtgtcgagttttaaccacatgcccaagctgaggacgttt
cgtttgcactcgaataacctgaattgcgactgccacctgtcctggttgtcccagtggctg
cgccagaggcccacactcggtctgttcacgcagtgctcatctccaccacagctccgtggg
atcaacgtggctgagatccagaaacatgagttcagttgttcaggtcattcagatagttcc
agcccacatacatgcagtcttgcttctggctcctgtcctaccatgtgcacctgcagcaat
aatatcgtggactgcagggggaaaggactaacagccatccccgccaacctgcctgaaaac
atggctgaaatacgactagaacagaatggcatcaggtccgtcccaccaggagcgttttcg
ccttacaagaagctgcgcagaatagacctcagcaacaaccaaatatctgagattgctcct
gatgccttccaaggcctgcgttcactcaactctctggtgctgtatgggaataagatcaca
gagttaccgaaaggcgtgttcgacgggctctatgccctccagctgctactactgaatgcc
aataagatacactgcgtccgtgctaacgcgttccaagacttgcagaatctttccctgctg
tctctctatgacaataagatccaaactttagccaagggtaccttttcctcactacgtgcc
attcagacacttcatctggcccagaacccatttatctgtgactgtaacctcaagtggcta
gctgactatctccgtgccaacccgatcgagacgagtggagcccggtgtgctagcccacgc
cgccttgctaacaagcgcattggccagattaagagcaagaagtttcgctgttctgccaaa
gagcagtactccattccaggcacggaggacaccaggttgaacaacgaatgcaacaatgaa
cccgtctgtccagccaaatgccgctgtgaatccaacgttgtagactgctccaatctgcgc
ctcaccaagatccctgaacacatcccagcctccactactgagcttcgtctgaacaacaat
gaaatcacttctctggaagctaatggtgcattcaagtctctaacacagctgaagaaaata
aatctcagcaacaataagattgctgagattgaagatggtgcgtttgagggcgcgtcatct
gtctcggagcttcacttaaccgcaaatcaactggattctgtgcgcagtggcatgttccgg
ggtctggaggggctccggatgctgatgctgcgcaacaaccgtattagctgcatccataac
aacagcttcactggcttgtacaatgttcgtctactgtccctctatgacaaccagctgacc
accatctcacctggagcttttgacactcttcagaccctctcgactctgaacttgctggcc
aactcctttaactgcgactgtcggcttgcatggctgggcgactggttgaggactcgcaag
attgtcaccggcaacccacgttgtcagcgccctgctttcctgaaggagattccactgcag
gatgtggctctgccagatttccgctgtgaagacggccaagaggatgccagctgcttgccg
cgcccacagtgcccgagtgagtgtacttgcctggagacagtggtccgctgtagcaacaaa
caccttcattccctcccgaagggcatcccacgtaatgttactgagctgtacctggacggc
aaccagtttagtgtcgtgccaaaagagcttgccaccttcaagtatctgcagctggttgac
ctgagcaacaacaaaatcagcaccttgacgaactcttccttcgcaaacatgagccagctc
accacattgatcctgagttacaacgcacttcgctgcattccgacacttgctttcgcaggt
cttcgctctctccgtctgctgtccctgcacggtaatgacatctccgagtttcctgatggg
atcttcagtgacgcagtgtctctgtctcacttggccatcggagcaaacccactgtactgt
gactgccgcttgcgctggctctcagactgggtgaagacgggttataaggagccgggcatt
gctcgctgcatcgggccgcctgaaatggagggaaagctactcctcacgacaccagccaag
aagtttgagtgccttggtgaagctgacccatctgtcctggctaagtgtaacccatgcctg
tctaatccctgtatgaaccatggcacatgccagacagattcaacagaactgtataagtgc
acatgtatagaaggcttcaagggaaagaactgcgagactgctctcaacgcctgcatcagt
aacccatgtgctaatggtggagcatgccaagtgaccgaaggagaagatagttacatttgt
tcatgtcccctgggattcgagggccaaagatgtgaaatcaacattgatgactgtgaggac
aacgactgcgagaatggagcaacctgcaaagatggtgtgaacaactacacgtgcttgtgt
gcaccttattacacaggagaaatgtgtgaagaactggaagacctgtgcactcctgaacgc
agcccctgcaagcaccagtccacctgtctcatcacagcggctggcccgaagtgtgtgtgt
gtgcctggatatgtgggagatgactgtagtgtggactatgatgactgtcaggaacacaaa
tgccagaacgatgcagactgcctggatgagatcaacggttattcctgcgtgtgcacccga
ggctacagtgggcagctgtgcgaggtgccacctgcaccactttccccctgccagctggct
gactgccaaaatgatgcaccgtgtgtggagcgagcaggccgggcactgtgccagtgtctg
cccggcttcggtggcccacgctgtgagaagctggtcagtgtcaattttgtggaccgggac
tcatatctactgctgagcgacttgaagaactggcctcaggccaacatcaccttgcaggtg
tccactgcagaggacaatggcatcctcttgtataatggtgacaatgatcacatcgctgtg
gaactcttccaaggtcacgtcaaggtcagctacgaccctggcagtcaacccggccatgcc
atttacagcacggagaccattaacgatggtcagttccacacggtggaattggtgaccttt
gaccagatggtgaacctatcgattgacgggggcgtgcccaccaccatgggcagcgtagga
atagtgaggcccctcaatggagacactccgctatacgtggggggtaggggcccagcgcag
atacctcgctccactgcaggcatgcctgttgatgtgcacgcgtccatagcgccacatgca
tggcacattcagaacggttccagtttccatggctgcatccagaacctgtacatcaacaac
gagctgcaggatttcaccaagacccagatgaagcctggcgtggtgcctggctgtgagcca
tgtcgaaagatttactgtctgcatggaatctgtcaaccagacgccgctcttggccccgtt
tgccattgccagccaggctggagtggccagcactgcgatcagcccactgccaacccatgc
cagggcaacaagtgtgtgcatggaaaatgcatcccgctggacatgcagtcctaccgctgt
gaatgccaagaaggttaccgtggtgctctgtgtaaccagcagggagaactcttcaacccg
tgcagaaggttacagtgcaagcatggccgctgccagatttcagactcgggtgatgcgtac
tgccactgtgagaatggatacactggagaattgtgcgatcaagagtcagagtgccgtggt
gagcaagtgcgggacttctaccaggtgcagcgtggctatgcaatctgccagacgacacgc
atgctctcgtgggtggaatgcagtggagcatgccaaccaggagcctgctgtgccagccag
aggaccaagcgccgcaaatacacatttgagtgcagcgatggcacttcgttcagcgaagag
gtggagaagagcatcaagtgcggctgtgtgggctgcatgtag
DBGET
integrated database retrieval system
