Neoarius graeffei (lesser salmon catfish): 132883801
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Entry
132883801 CDS
T10798
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04115
p53 signaling pathway
ngra04145
Phagosome
ngra04148
Efferocytosis
ngra04350
TGF-beta signaling pathway
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
132883801 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132883801 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
132883801 (thbs1b)
04148 Efferocytosis
132883801 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
132883801 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
132883801 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132883801 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ngra04131
]
132883801 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132883801 (thbs1b)
Membrane trafficking [BR:
ngra04131
]
Endocytosis
Phagocytosis
Opsonins
132883801 (thbs1b)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132883801 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
Laminin_G_2
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
132883801
NCBI-ProteinID:
XP_060773807
LinkDB
All DBs
Position
3:complement(104214505..104224662)
Genome browser
AA seq
1197 aa
AA seq
DB search
MWRVSPFPLSAFQTALRSVRNKRRGFAMKLTGIFLLVMLWSCESARVAESRDDNSVYDLF
ELVRLPKKNHGVMLVKGDDPYSPAYKILNPDLIPPVPEDAFRDLVDSVQAERGFLLLGNF
KQARRTRGSLFTVEKRDGSGTLFEVVCNGKANTLDIVFATENKQQVVSIEEAELATGHWK
NITLLVQEDRVHFYVGCEEVNNAELDVSIQNVLTPDTPSVANLRIGKGAVNDKFRGVLQN
VRFVFGTTLDAILRNKGCQNSGADMLTLHNPVNGSRPAIRTDYTGHKTKELQMICGYTCE
DLASMFKELKTLGVMVKDLTDKLRKVTNENTLIGGTLGIHSGVCFHNGIMHKNKEEWTVD
DCTECTCQNSATVCRKISCPLLPCANATVPDGECCPRCGTPRDYAEDGWSPWSEWTHCSV
SCGRGIQQRGRSCDRINNNCEGTSVQTRDCYLQECDKRFKQDGNWSHWSPWSSCSVSCGS
GVITRIRLCNSPTPQLGGKDCEGQGRQTKKCEKSQCPINGDWGPWSPWDTCSVTCDGGVQ
NRKRLCNSPPPMYGGKDCVGDEKESQLCNKEACPIDGCLSNPCFAGAKCTSFPDGSWKCG
KCPAGYTGNGINCNDIDECAEVPDACFEFNGVHRCENTAPGYNCLPCPPRYTGPQPFGRG
VEEAAAKKQVCTPRNPCLDGSHDCNKNARCNYLGHFTDPMFRCECKPGYAGNGHICGEDT
DLDGWPNADLVCVENATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDDDDIPDDRDN
CPFIFNPRQYDYDRDDVGDRCDNCPYNSNPDQTDTDNNGEGDACAVDIDGDGILNEKDNC
PYLYNVDQKDTDLDGVGDQCDNCPLEHNPEQLDTDSDRVGDKCDSNQDIDEDGHQNNLDN
CPYIPNANQADHDKDGKGDACDYDDDNDGIPDDKDNCRLAFNPDQLDTDGDGRGDACKDD
FDQDNVPDIYDVCPENFDISETDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCD
PGIAVGFHEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPT
KAQGYSGLSIKVVNSTTGPGEHLRNALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLT
HRPRTGHIRVVMYEGKKIMADSGRIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgcgtctctccttttcccctgagcgcgttccagacggcgctgcgctctgtgagg
aacaagaggagaggctttgcaatgaagttaacaggaatatttttattagtgatgctttgg
agctgcgagagcgcacgagtggcagaaagcagagacgacaacagtgtttatgacctgttc
gagctcgttcgactgcctaagaagaaccacggggtcatgctcgtgaagggcgatgaccct
tacagtcctgcctacaagatcctgaacccagacctcatcccgccggtgcccgaggacgcg
ttccgggacctggtggactccgtgcaggcggagcgcggcttcctgttgctgggcaatttc
aagcaggcgaggcgcaccaggggctccctgttcaccgtggagaagcgtgacggctctggc
accctgttcgaggtggtgtgcaatggcaaagccaacaccctggacatcgtgttcgccacg
gaaaacaagcaacaagtagtgtccatcgaggaagcagagctggccacgggtcactggaag
aacattacgctcttggtgcaggaggacagggtgcacttctatgtcggatgtgaggaggtg
aacaacgccgagctggacgtgtcaatccagaacgtcctcactccggacacaccaagcgtg
gccaacctgaggatcggcaagggagctgttaatgacaaattcaggggtgtgctccaaaat
gttcgatttgtttttgggaccacgctggatgcaatactgaggaataaaggatgtcagaac
tccggtgctgacatgctaactctacataatccggtgaatggatccagaccagctatcagg
actgattatactggccacaaaacaaaagagttgcagatgatatgtggctatacctgtgag
gacctggccagtatgtttaaggaactaaagactcttggtgtaatggtgaaagatctgacc
gacaagctccgcaaagtgacaaatgagaacactttgattggtggaactttggggatccat
tctggtgtctgtttccacaatggcattatgcataaaaacaaggaagaatggacagtggat
gactgcaccgagtgcacttgccaaaactcggcgacggtatgccgtaagatttcctgtccc
ttgcttccctgtgccaatgcaactgttcctgatggtgaatgctgcccccgatgtggaact
cccagagactatgctgaggatggctggtccccctggtctgaatggactcattgttctgtg
tcctgtggaagaggcattcagcagcgtggccgctcctgcgaccgcatcaataacaactgc
gagggcacatctgtgcaaacgagagactgctacctccaggagtgtgacaagcgctttaag
caagatggcaactggagccactggtcaccatggtcctcttgctcagttagctgtggatca
ggagttatcacacgcatccgtctttgcaactctcctactccccagctgggaggaaaagac
tgtgagggccaaggcaggcaaactaagaaatgtgagaagtcacagtgtccaatcaatggt
gattgggggccttggtcaccttgggatacctgttcagtaacctgtgatggcggtgtccaa
aatcgcaaacgtctttgtaatagtccaccacccatgtacggtggcaaagactgtgttggt
gatgaaaaggaaagtcagctttgcaataaggaagcttgtcctattgatggatgtctgtcc
aatccctgttttgctggagccaagtgtacaagctttccagatgggtcttggaaatgcgga
aaatgcccagcaggttacactggcaatggcattaactgcaacgacattgatgagtgcgca
gaggttcctgatgcttgcttcgaatttaatggagtccatagatgtgaaaatacagcacct
ggctacaactgcctgccatgtcctccacgctacactggtccacagccatttggtcgtgga
gtggaggaagctgctgcaaagaaacaggtgtgcacacctcgtaatccctgccttgatgga
agccatgactgcaataagaacgcacgctgcaactacctgggtcatttcacagaccccatg
ttccgctgtgagtgcaagcctggctatgctgggaatggacacatctgtggagaggacaca
gatctggatggctggcctaatgctgaccttgtgtgtgtggagaatgctacctatcactgc
aagaaggacaactgcccaaaccttccaaattctggtcaggaggactatgacaaggatgga
attggtgatgcttgtgatgatgacgacgatgatgatgacattcctgatgacagggacaac
tgcccatttattttcaatcccagacagtatgactatgaccgggatgatgttggtgaccgc
tgtgacaactgcccatacaatagcaaccctgaccagactgacacagacaacaatggtgaa
ggtgatgcatgtgccgtggatattgatggagatggtattctgaatgaaaaggataactgt
ccttatctgtacaatgtggatcaaaaggatactgatctggatggggttggtgatcagtgt
gataactgccctctggagcacaatcccgagcagcttgatacagactctgaccgtgtagga
gataagtgtgacagcaatcaggacattgatgaagatggtcatcaaaacaacttggacaac
tgtccttatattcccaatgccaaccaagctgaccatgacaaagatggcaaaggagatgct
tgtgattatgatgatgacaatgatggcatccctgatgataaagataactgtagattggct
ttcaacccagatcaactggacactgatggtgatggacgtggtgatgcttgtaaagatgac
ttcgaccaggacaatgttccagacatctatgatgtgtgcccagaaaactttgacatcagt
gagactgacttccgcaagtttcagatggtgcctctggaccccaagggcacttcccagatt
gatcctaactgggtagtccgtcaccaagggaaagagttggttcagacagttaactgtgat
ccaggaattgctgttggtttccatgagtttaacgcagtggattttagtgggaccttcttc
ataaatacagagagagatgatgactatgcaggatttgtgtttggttaccaatccagctcc
cgtttctatgtggtgatgtggaagcagataactcagacctactggtccagcacacccacc
aaggcacagggttactcagggctgtcaatcaaagtagttaactcaaccactggaccaggt
gaacacctaaggaacgccctttggcacactggggatactcctggacaggtccgcactctg
tggcatgaccctaagaatattggttggaaggactttactgcctacagatggcacctgact
cacagaccaagaaccggacacataagggttgttatgtatgaaggaaagaagatcatggca
gattctggaagaatctatgacaaaacatatgcaggtggacgactaggtcttttcgtcttc
tcacaagagatggtatacttctcagaccttaagtatgaatgcagagatgcataa
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integrated database retrieval system
