Neoarius graeffei (lesser salmon catfish): 132890471
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Entry
132890471 CDS
T10798
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
132890471 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132890471 (kdm2ab)
04121 Ubiquitin system [BR:
ngra04121
]
132890471 (kdm2ab)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132890471 (kdm2ab)
Enzymes [BR:
ngra01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
132890471 (kdm2ab)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
132890471 (kdm2ab)
Ubiquitin system [BR:
ngra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132890471 (kdm2ab)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
132890471 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
132890471 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
PHD
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
132890471
NCBI-ProteinID:
XP_060783316
LinkDB
All DBs
Position
8:14272218..14323468
Genome browser
AA seq
1263 aa
AA seq
DB search
MEETRYSKRLRTGTRRRYQDDGISDDEIEGKTTFDLEEKLESSYFNSDLVKIMHGKDFTF
EYIQREGLRDPIIFMKADGLGIQMPDPDFSVSDVKLFVGSRRMIDVMDVSTQKGMEMSMS
QWRRYYETPASEREKLYNVISLEFSHTKLEHLVKRPASVDLIDWVDNMWPRHLKERQRDS
TNAIMDMQYPKVQKYCLMSVKGCFTDFHVDFGGTSVWYHILRGRKVFWLIPPTPHNLELY
ENWMLSGKQGDIFLGDKATACQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHSFN
IPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPEFQRHSLGIGLK
KEDFAKQGNEEKEEVKEEGDEEEEEAPSPPARPGVKVHLTPLELEGLWQLLHKLEDLPAH
KKCVPAGIRNAPALLSDIRALLEEHANDDPKLSYTGKPIVTWPKRPSWYRPLPTSPSVIY
RSRPSGSGPTMAPVPRPTKPASSISALRRRRVRCKRCEACRRAECGDCTYCRDMKKFGGP
GRLKKSCIRRQCLAPALPLTAICAICKEGSQEDAEGTQTTQTLMECSECGQITHPECITV
PGEGVINKDLPSCWECPKCVQDKNTESSSSSSEEEGKSTSSSPTSAPPAKRAYREGIGVG
ALRLRRGQPPSSPSSLPLTRSRRQPPPSQRILLQHQQSRKRVGAFERQHRKRIKLERSKL
FQSTRPSVSVSPKLLRQRSLERGSMIKAGLGRGVSHRKGLSYQGREMRLRSEARGGALRG
RTEREEHGDDSSKEEENEKAERRENGLGGKENRPQRYGGRPAEDENGDAQQNAEREEDGE
QTRSESAGVLSDETRDQRSCVTVTLQPSRGRRDPSTIVPKLEANVSSVSHTQSNSDFQGK
SLLRPPLRGDSRRADKAHSHTHLHAARQQVQAHTLTRSTSKHTHVSQSLRCSLRGTRHNT
TQERNGKNVRPERGKPSASSPSSASCTSPEQNGASEPGWGRLVWVSVFRYLTRTELCVCM
AVCKSWYKWGCDKRLWTHISLSRCQSISPQALSGIIKRQPVTLDLSWAKISKKQLTWLIN
RLPGLKDLVLSGCNWISVSALSSPSCPLLRSLDLRWADGVKDAQIRELLSPPGSNNRSQL
RNMQCLRLCGLEVTEATLRLIIRHMPQLTRLELSHCPLTDNALNLLTAVGSSTRNTLAHL
NLAGCSRLTDHCLVYLQRLSCLSVLDLRSCKGISRQACEKFISELSVNALYCLSDDKLIQ
RIS
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaacccgctacagcaagcgcctgcgaacaggaacacgccggcgctaccaggac
gatggcatctcagacgatgagattgagggcaagacgacttttgacctagaagaaaagctt
gaaagcagctacttcaattccgacttggtcaaaataatgcatggaaaagacttcactttt
gagtatatccagcgggaggggcttcgggaccccatcatctttatgaaagcagatggtctt
ggcattcaaatgcccgatccagacttcagcgtgagcgatgtgaaactgtttgtaggcagt
cgacggatgattgacgtgatggatgtaagcactcaaaagggcatggagatgtcaatgagt
cagtggaggagatattatgaaactccagcgtcagaaagggagaagctgtacaacgtcatc
agcctcgagttcagccatactaaactggagcatctcgtcaaaagacctgcctcagtcgat
ctgatcgactgggtggataacatgtggccacggcacctgaaggagaggcagagagactcg
accaacgccatcatggacatgcagtaccccaaagtacagaagtactgtctgatgagtgtg
aagggctgttttacagacttccatgttgattttggtggcacgtcagtctggtatcacatc
ctgagaggacgcaaggtgttctggctgataccgccaaccccacacaacctggagctctat
gagaactggatgttgtcaggaaaacagggtgacatctttctcggggacaaagccaccgcc
tgccagcggattgagctaaaacagggttacacctttatgatcccctcaggttggatccat
gcagtatatactcctgaggatactctggtgtttggagggaatttcttgcacagctttaat
attcctatgcagctgaacatctacaacattgaagaccgcacacgggtcccagccaagttc
cgttacccattctattacgagatgtgttggtatgtgttagagcgttacctgtactgtctg
accaacacctctcatctaacgccagagtttcagagacactcactgggcatcgggctgaaa
aaagaggactttgctaaacaaggcaacgaggaaaaagaagaggtgaaagaagaaggtgat
gaggaggaagaagaagctccctctcctccggcccgtcctggggtgaaggtccacctgacg
ccgttggagctggagggactgtggcagctgctgcacaaacttgaggatttgcccgcacac
aagaagtgtgtacctgcagggatcagaaacgctccagcacttctcagtgacatccgtgcc
ctgctagaagaacatgccaatgatgatccaaaattgtcttacactggaaaacccattgtc
acatggcccaaaaggccctcgtggtatcggccactccctacttccccatctgttatatat
cggtcacgcccttcaggttcaggccccacaatggccccggtgcctcggccaaccaagccc
gcatcttctatctcggctctgaggcggcggcgtgtgcgctgtaaacgctgcgaggcctgc
aggcgcgccgagtgtggagactgcacctactgcagggacatgaaaaagtttggtggcccg
ggacgactcaagaagtcctgcattcgcagacagtgcctggctccggcgctgcctctgacc
gctatctgtgccatatgtaaagaggggagtcaggaagatgctgaaggcacccagaccacc
caaacactcatggagtgctctgaatgcggtcagattacacacccagaatgtataacggtc
ccaggggagggtgtgatcaataaggatctccccagttgctgggagtgtcccaaatgtgtc
caggataagaatacagagtcttccagcagcagttcagaagaggaaggtaaaagcacgagt
agctcgccaacctctgctccacctgctaaacgggcgtacagagagggcattggggtgggg
gcactgcgtttgcgcaggggtcagcctccctcatcaccctcatccctgcctctgactcgc
tcccggcgccaacctccaccctcacagagaatcctgctgcagcaccaacagagccgcaag
agagtcggtgcatttgagcgacagcacagaaagaggatcaaattagagaggagcaaactc
ttccagtcaacacggccctctgtctctgtttctccaaagctcttgcgacagcggagtttg
gagagagggagcatgattaaggcaggactcggcaggggcgtgtcccacaggaaaggcttg
tcctatcagggaagagaaatgcggctcagaagcgaagcaagaggcggcgctctgcgagga
agaacggagagagaggagcacggagacgacagtagcaaggaggaagaaaacgagaaggcg
gaaaggagagagaacgggctgggaggtaaagagaaccggccgcagagatacggaggaagg
ccggcggaagacgagaacggagacgctcaacagaacgcggagcgggaggaggacggagag
cagactcgctcagagtctgccggggtgctcagcgacgagaccagagatcagaggtcgtgc
gtgaccgtgaccttgcagccatcacgaggcagacgggaccccagcactattgtccccaag
ctcgaagcgaacgtatcctctgtaagccacacccaaagcaacagcgacttccagggcaag
tccctgctccgcccaccactccggggtgattcacgccgtgcggataaagctcactcccac
acacacttgcatgcagccaggcaacaagtccaagcccacaccctgaccaggagcacttcc
aaacacactcatgtgagtcaaagcttaaggtgtagcttgagagggacccgtcacaacacc
acacaagagaggaacgggaaaaacgtgcgaccggaaagagggaagccttctgcctcttct
cccagctcagcgtcctgcacatcacctgagcagaacggagcgagcgaaccaggctggggc
aggctagtctgggtgtccgtcttccgctacctgactcgaaccgagctgtgcgtctgcatg
gctgtgtgcaagagctggtacaaatggggctgcgataaacgcttgtggacgcatatcagt
ttgagccgctgtcagtccatcagcccacaggccctctctggcatcatcaagcgccagcca
gttacactggatctgtcctgggccaaaatatccaaaaaacagcttacatggctcatcaac
cgattaccagggttgaaagatctggtgctttcagggtgtaactggatatccgtctctgct
ctgagctctcccagttgtcctttactacgctcgttagacctgcgctgggcagacggcgtc
aaagatgcacagatcagagagctgctcagcccgccaggaagtaataaccgttcccagctg
agaaacatgcagtgcttgaggctgtgtggtctggaggtgaccgaggccactctaaggctg
atcatcaggcacatgccccagctgacgaggctggagctctcacactgccctctgactgac
aacgctctcaacctcctcaccgctgtgggctcctccacacgcaacacactcgcacacctc
aacctagcaggttgcagtcgtctgacagaccactgtctggtgtacctacagcgtttgtcc
tgtctctctgtgttggacctgcgcagctgtaaaggaatctcccggcaggcttgtgagaaa
ttcatctccgagttgtccgtcaatgccctctactgcctatcggacgataaacttatccag
agaatatcctag
DBGET
integrated database retrieval system
