Neoarius graeffei (lesser salmon catfish): 132894022
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Entry
132894022 CDS
T10798
Symbol
ltbp1
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1 isoform X1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
132894022 (ltbp1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ngra04990
]
132894022 (ltbp1)
Domain-containing proteins not elsewhere classified [BR:
ngra04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
132894022 (ltbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
hEGF
EGF_3
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
EGF_TEN
EGF_2
TRAPP14_C
Motif
Other DBs
NCBI-GeneID:
132894022
NCBI-ProteinID:
XP_060789201
LinkDB
All DBs
Position
11:complement(1218938..1380300)
Genome browser
AA seq
1510 aa
AA seq
DB search
MAGIRWKLSRLLPSLLSSSFFAFLLLSPSCALLHSDRVRASSVSGFGVELGGVGVPVRTR
RTGSSPGGLSHHMKLSGVNVCGGQCCIGWSRAPGSQRCTKPNCLPKCQNGGMCLRPQMCV
CKPGSKGKLCEQTTLPTSSHPTGPVNGHTNGHSNGHTLVPQRPIPQQVFPQGPASYPRPK
MNMAHMTLSMKVAPNSQQPIPFQQHVQHPVSINIQQGKSQKFVIKPKFYPSHNTRTQLHR
PGYTPERSIPLSVGHHSLHVANHTGRIKLVFTPTICKLTCSGSRCHNTCEKGNTTTIISE
NGRTTDTLTAPNFRVVVCHLPCMNGGKCSVRDKCQCPPNFTGKFCQMQTKNGPSTNIQTT
HTLPLSYGHGQGVVNIHVNHPPEASVQIHQVSQVDSSSTVQKFQQHSTYSNQQSFLHYQP
VTSKNQLGRCFQETSGTQCGKALPGLSKQEDCCGTIGTSWGFHKCQKCPRKQSIPLLECP
HGYKRFNSTRCIDINECQLQGVCPNGNCINTPGSYRCLCKSGFIPDATLTSCYPESPPPV
REEERGACFRVFSGGRQCLHPVSTELSKQLCCCSVGKAWGGQCERCPLPGTAAFKEICPG
GLGYHVTNPYVYKPKPPPPPVNPEVFERGDGHRPVITHPKPTIAISPLPVPTVQQPIEAF
SFTERHLPVPVVVEKTSPAAPVVILPSSASQDIYPTQFAEVDECAVSPRICGQGLCYDTA
ESYTCICNDGYKLNDEATTCVDVDECVDDPHLCVHGRCENTPGYFTCVCQLGFNLDEEGT
SCIDINECEAPYVCPENSVCVNTAGSYTCRQCSRGYTLGQSGQCEDVDECQNGSVCPTGV
CYNTLGSYMCSPCPEGFQGKDGKCVDIDECVDGSVCAHGQCSNHEGFFICTCDDGFIPTP
DRKACTDIDECQDENVCMRGHCENTEGAFVCHCESGFTVSESGEQCDDVDECRELSGLCD
GVGQCVNNIGSYHCNCPLGYRQVNGTRCQDVDECVEETVRPHSVECVNTEGSFYFICEHG
YTWTHDPPACEDVDECALNRSVCQHGVCQNTVGSFFCQCDPGYEDKHDGKGCEDMNECEL
LSDVCGEAVCENVPGSFECVCPEEGFEFNQMTAKCLPAPQASSTGRKVCYYNLSDENLCD
NVLASGVTIEECCCTLGAGWGDNCEVHPCPVQGSDQFTQMCPAGRGRIPTGDDTSPVTYK
DADECDIFKDEICKDGFCQDTPGEFECYCKAGLYYDETKLQCVDTDECLDELNCVGGQCL
NSHGSYQCFCTPPTVLDATNKRCVFPEAAEPSEQQGVHQEVCWQTVSPTMTCTNVLSNRV
TTYTECCCLYGEAWGMQCALCPPKHSEDYAIMCNIRGSGSVRRPYGQDALVAGPVHEYEV
GPEYGPRTLNSNPTFYEDYDDSNMGRYEAFEGLRAEECGVLNGCENGRCVRVQKGYTCDC
FDGYTLDMSRMACIDVNECTELNKRMSLCRNGKCINTQGSYKCQCLPGYTPSERPNYCVP
IMPSASTSTE
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggccgggatccggtggaagttgagtcggctgctcccctcgctgctctcctcctctttc
ttcgccttcctgctgctctctccgtcctgcgcgctcctccactcggaccgggtgcgcgcg
agctccgtgtccgggttcggtgtggagctcgggggagtcggtgttccggtccggacccgc
aggacgggctcgagccccggcggactgagccatcacatgaagctgtccggggtgaatgtc
tgtggagggcagtgctgtatcggatggagccgagcgcctggatctcagcgctgcacaaaa
cccaactgtcttccaaaatgccagaatggaggcatgtgcctcaggccgcagatgtgtgtg
tgtaaacctggatcaaaagggaaattatgtgagcaaaccactctgcccacttcctctcat
ccgactggtccagtgaatggacacacaaacggacacagtaatggacacaccctcgtgccg
cagcgtccgattcctcagcaggttttcccacaaggccctgcttcatatcctcgacccaag
atgaacatggctcacatgaccctgagcatgaaggtggcgcccaacagtcaacagccaatc
ccctttcagcaacatgtacagcatcctgtttcaataaatatacagcagggaaaaagccag
aagtttgtgatcaagccgaagttttatccctcacataacacacgcacgcagctgcacaga
ccaggatacacacctgagcgcagcatccctctgagcgtcggacaccactcactacacgtg
gccaaccacacgggtcggatcaaactcgtcttcactccaaccatctgcaagctgacgtgt
agcggcagtcgctgccacaacacctgcgagaaaggaaacacgaccaccatcatcagcgag
aacgggcgcaccactgacacgctcaccgcccctaacttcagagtcgtggtgtgtcatctg
ccctgtatgaatggagggaagtgtagcgtgagagataaatgccagtgtccaccgaacttc
accggaaagttctgccagatgcagacaaagaatgggccgagcaccaacatccaaaccaca
cacacactcccactgagctatggccacggccagggtgtggtgaatattcatgttaatcat
ccgcctgaagcatcagttcagattcatcaggtgtctcaggtggacagcagcagcactgta
cagaaattccagcagcacagcacgtattccaaccagcagagcttcctgcattaccaaccc
gtcacgtctaagaaccaactcggacgctgcttccaggaaaccagtggcacacagtgtggg
aaagccctcccgggcctctctaagcaggaggactgctgtgggacgatcggcacttcctgg
ggatttcacaaatgccaaaagtgtccaaggaaacagtcgattcctctgcttgagtgtcct
catgggtacaagaggtttaacagcactcgctgcattgatataaatgagtgtcagttacag
ggtgtatgtccaaatgggaactgcatcaacacacccgggagctacaggtgtttatgtaaa
tctggattcatccctgacgccacactcaccagctgctaccccgaatccccgccccctgtg
cgtgaggaggagaggggggcgtgtttccgtgtgttcagtggcgggcgtcagtgtttacac
cccgtctctactgagctgagcaaacagctgtgctgctgcagcgtggggaaggcgtggggg
ggccagtgtgagcgctgtccactgcctggaacagctgcgtttaaggagatttgtcccggc
ggtttgggttatcacgtgaccaatccatacgtgtataaacccaaacctcctcctcctcct
gtaaacccggaggtgttcgaacggggcgatggacaccgtcctgtgatcacgcacccgaaa
ccgaccatcgccatctccccgctgcccgtccccaccgtccagcagcccatcgaggctttc
agcttcacggagagacacctacctgtcccagtggtggtggagaaaacctcacccgctgct
ccagtcgtcattttaccatccagtgctagtcaggacatttacccaactcagtttgcagaa
gtggacgagtgtgcggttagtcctcgtatctgtggtcaggggctgtgctacgatacggcc
gagagctacacctgcatctgtaacgacggctacaagctgaacgacgaggcgaccacctgc
gtagatgttgatgagtgtgtggacgatcctcacctgtgtgttcatggccgctgtgagaac
acacctggctatttcacctgtgtgtgtcagctgggctttaatctggatgaggagggaacc
agctgcatcgatataaatgagtgtgaagctccgtatgtgtgtcctgagaacagtgtgtgt
gtgaacacagctggttcgtacacgtgtcgtcaatgcagcagaggatacactctgggtcag
agtggacagtgtgaagatgtagatgaatgtcagaatgggagtgtgtgtccgacgggtgtg
tgttataacacactcggctcgtacatgtgcagcccgtgtcctgaaggcttccagggcaaa
gacggcaagtgtgtggatattgatgagtgtgtggatggatccgtgtgtgctcacggtcag
tgctccaatcatgaaggtttcttcatctgtacgtgtgacgacggcttcattcccactcca
gaccgcaaagcctgcacagacattgatgagtgccaggatgagaatgtgtgtatgaggggt
cactgtgagaacacggagggagcgttcgtctgtcactgtgagagtggatttacagtctcc
gagtcaggagagcagtgtgatgatgtggatgagtgtcgggagctgtcagggctgtgtgat
ggtgttggtcagtgtgtgaataacatcggatcataccactgtaactgtcccctggggtac
cggcaggtcaacggaactcgctgtcaagatgtagatgagtgtgtagaggagactgtgagg
ccgcacagtgtggagtgtgtgaacacagagggctcattttacttcatctgtgagcatgga
tacacctggacacatgatccacccgcatgtgaggatgtggatgagtgtgctctgaacagg
agtgtgtgtcagcacggtgtgtgtcagaacactgtggggtcgtttttctgtcagtgtgat
ccgggatatgaggacaaacacgacggcaagggctgtgaggatatgaacgagtgtgagctc
ctgagtgatgtgtgtggtgaggcggtgtgtgagaacgtaccaggttctttcgagtgtgtg
tgtcctgaagagggcttcgagttcaaccagatgacggcaaagtgtttacctgcaccgcaa
gcctcgtccacagggaggaaggtgtgttactacaatctgagcgatgaaaacctgtgtgat
aacgttctggcgagtggcgtgacgatcgaggagtgctgctgtacgctcggagcaggatgg
ggcgacaactgcgaggttcacccctgtcctgtccaaggctcagatcagttcactcagatg
tgtcccgctggacgaggcaggattccaactggagatgacacctcacctgttacttacaaa
gatgctgatgaatgcgatatctttaaggatgagatctgtaaggacggattctgtcaggac
acaccgggagaattcgagtgttactgtaaagccggactctactacgacgagacgaagctg
cagtgtgtagacacagacgagtgtctagacgagctgaactgtgtgggtggtcagtgttta
aatagtcacggatcgtatcagtgtttctgtacgccccccacggtgctcgatgcaacaaac
aagcgctgtgttttccccgaagcagcagagcccagtgagcagcagggtgtgcatcaggag
gtctgttggcagactgtttcccccacaatgacctgcaccaacgttctgagtaaccgagtg
accacatacaccgagtgctgctgtctgtacggagaggcctggggcatgcagtgtgcactg
tgtcctccgaaacactctgaggattacgccatcatgtgtaatatccgaggttctgggtcg
gtcagacggccttacggtcaggacgcgctggtggccggacctgttcacgagtacgaggtg
ggcccggagtacggcccacgcactttgaactcgaacccgaccttctacgaggactacgac
gactctaacatggggagatacgaggcgtttgaaggactgcgtgcggaggagtgcggagtg
ttaaacggctgtgagaacggaaggtgtgtgagggtgcagaagggatacacatgcgactgt
tttgatggatacacactcgacatgtcccgcatggcctgcatcgatgtaaacgagtgcacg
gagctcaacaagcgcatgtctctgtgcagaaacgggaaatgcatcaacacacagggttcg
tataaatgccagtgtttgcctggatacacaccatcagagagacccaactactgcgttccc
atcatgccaagcgctagcaccagcaccgagtga
DBGET
integrated database retrieval system
