Nguyenibacter sp. L1: QN315_17415
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Entry
QN315_17415 CDS
T09784
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ngu
Nguyenibacter sp. L1
Pathway
ngu03030
DNA replication
ngu03410
Base excision repair
ngu03420
Nucleotide excision repair
ngu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QN315_17415 (ligA)
03410 Base excision repair
QN315_17415 (ligA)
03420 Nucleotide excision repair
QN315_17415 (ligA)
03430 Mismatch repair
QN315_17415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngu03032
]
QN315_17415 (ligA)
03400 DNA repair and recombination proteins [BR:
ngu03400
]
QN315_17415 (ligA)
Enzymes [BR:
ngu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QN315_17415 (ligA)
DNA replication proteins [BR:
ngu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QN315_17415 (ligA)
DNA repair and recombination proteins [BR:
ngu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QN315_17415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QN315_17415 (ligA)
MMR (mismatch excision repair)
DNA ligase
QN315_17415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QN315_17415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WRH87708
LinkDB
All DBs
Position
complement(3855844..3857988)
Genome browser
AA seq
714 aa
AA seq
DB search
MSHTQAAPNPATPDPATPDLATLPPDALSESQAAAELERLAARLHDLDRAYYEQDAPAVS
DAEYDALRRRNLAIETRFPALRRADSPSLRVGAAPAAAFGRHRHLVPMLSLDNVFNREDF
ESFIARAVRFLGLTEEQSHTLRFVAEPKIDGLSISLTYEHGVFVRGTTRGDGTEGEDVTA
NLRTLRDLPQRLRGHAPALIEIRGEVFLSKPAFLAINADQAAAGQKPFANPRNAAAGSLR
QLDPAITARRPLSLFAYAQGFASDRLAGTHWDYLDRLRHWGFAVNPLSRIVENAHAAEDF
METIARERSGLAYDIDGVVYKIDDLALQDRLGFVGRAPRWAIAWKFPAEQAITRLTRIDI
QVGRTGALTPVAILEPVNVGGVIVTRATLHNEDEITRKDIREGDLVQIQRAGDVIPQVLG
IVPPRPGEAPRAEPFRFPHECPICHSRAERPPGEVVWRCTGGLTCPAQIVERLIHFVSRD
AFDIDGLGERTITEFYQDGLIRTPGDIFRLPEHEAEIAGRDGWGEVSARNLSNAIRARRT
IPLARFIYALGIRRIGASNARLLARHYGAYAHWRDQMLRATQIGSDERLALGSITGIGTA
IADELAAFFMERHNLDTLADLAAILTIEDEDMPAQGHLSGKTIVFTGTLTTMTRPEAKAV
AERLGARVTDSVSKKTDLVVLGADAGSKARKAAELGIDTLDEAGWRELAGMPPA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacacgcaagccgcccccaatccggcgacccccgatccggcaacccccgatctg
gcaaccttgcccccggacgcgctctccgaatcccaggccgccgccgaactcgaacgcctc
gccgcgcggctgcacgacctggaccgcgcctattacgaacaggacgcccccgccgtctcc
gacgccgagtatgacgcgctgcgccggcgcaacctggcgatcgaaacccgcttccccgcg
ctacgccgcgccgacagcccctcgctgcgcgtcggcgccgcccccgccgccgcgttcgga
cggcaccgccaccttgtgccgatgctctcgctggacaacgtcttcaaccgcgaggatttc
gaatccttcatcgcccgcgccgtccgcttcctcggcctgaccgaggagcagtcgcatacc
ctgcgcttcgtcgccgaacccaagatcgacgggctgtcgatcagcctgacatacgaacac
ggggtcttcgtccgcggcaccacccgcggcgacgggaccgagggcgaggacgtcaccgcc
aatctgcgcaccctgcgcgacctgccccagcgcctgcgcggccacgcccccgccctgatc
gagatccggggcgaggtcttcctctccaagcccgccttcctggccatcaatgccgaccag
gcggccgccgggcagaaaccgttcgccaacccgcgcaacgccgccgcgggctcgctgcgc
cagctcgaccccgcgatcaccgcccggcgcccgctctcgctcttcgcctatgcccagggc
ttcgcctccgaccgactggccggcacccattgggactatctcgaccggctgcgccattgg
gggttcgcggtcaatccgctgtcgcgcatcgtcgaaaacgcgcacgcggccgaggatttc
atggaaaccatcgcccgcgaacgctcgggcctcgcatacgacatcgacggcgtggtctat
aagatcgacgacctggccctgcaggaccggctgggcttcgtcggccgcgcgccgcgctgg
gcgatcgcctggaaattccccgccgaacaggccatcacccgcctcacgcgcatcgacatc
caggtcggccgcaccggggcgctcacccccgtcgccatcctcgagccggtcaatgtcggc
ggcgtcatcgtcacccgcgcgaccttgcacaacgaggacgaaatcacccgcaaggatatc
cgcgagggtgacctggtgcagatccagcgcgccggcgacgtcatcccccaggtgctcgga
atcgtcccgccccgccccggcgaggcgccgcgcgccgaaccgttccgcttcccccatgaa
tgcccgatctgccactcccgcgccgaacgtcccccgggcgaggtggtctggcgctgcacc
ggcggcctgacctgcccggcgcagatcgtcgaacggctgatccatttcgtctcgcgcgac
gccttcgacatcgacgggctgggcgagcgcaccatcaccgaattctaccaggacggcctg
atccgcaccccgggcgacattttccgcctgccggagcacgaggccgaaatcgccggccgc
gacggctggggcgaagtctcggcccgcaatctcagcaacgccatccgtgcccgccggacc
atcccgctggcccgcttcatctacgcattgggcatccgtcgtatcggcgccagcaatgcc
cgcctgctggcccgccattacggcgcctatgcccattggcgcgaccagatgctgcgcgca
acgcagatcggctcggacgaacgcctggccctgggctcgatcaccggcatcggcaccgcc
atcgccgacgaactcgccgcctttttcatggaacggcacaatctcgacacgctggccgac
ctcgccgccatcctgacgatcgaggacgaggacatgcccgcccagggccacctgtcgggc
aagaccatcgtcttcaccggcacgctgaccaccatgacccgccccgaggccaaggccgtg
gccgaacggctgggcgcgcgcgtcaccgacagcgtgtcgaagaagaccgacctggttgtg
ctcggcgccgatgccggctccaaggcccgcaaggccgccgaattgggcatcgacacgctc
gacgaggccggatggcgcgaactcgccggcatgccgcccgcctga
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