Nitrobacter hamburgensis: Nham_1290
Help
Entry
Nham_1290 CDS
T00348
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nha
Nitrobacter hamburgensis
Pathway
nha03030
DNA replication
nha03410
Base excision repair
nha03420
Nucleotide excision repair
nha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nham_1290
03410 Base excision repair
Nham_1290
03420 Nucleotide excision repair
Nham_1290
03430 Mismatch repair
Nham_1290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nha03032
]
Nham_1290
03400 DNA repair and recombination proteins [BR:
nha03400
]
Nham_1290
Enzymes [BR:
nha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Nham_1290
DNA replication proteins [BR:
nha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Nham_1290
DNA repair and recombination proteins [BR:
nha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Nham_1290
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nham_1290
MMR (mismatch excision repair)
DNA ligase
Nham_1290
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nham_1290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABE62115
UniProt:
Q1QNT2
LinkDB
All DBs
Position
1453345..1455489
Genome browser
AA seq
714 aa
AA seq
DB search
MAAKPKTPPPVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAI
EARFPDLITANSPTQTVGAAPARGFAKVQHAVPMLSLGNAFSDEEVAEFVERIQRFLKLG
PDDIPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPHNLRGRN
IPTACELRGEVYMLKTDFLALNKKQEDAGDTVFANPRNSAAGSLRQKDVAITASRPLKFF
AYAWGEMTDRPADTQHDMLEWLKDVGFKVNPLIELCNSVEKVLKFYRKIGEQRASLGYDI
DGVVYKVDRLDWQERLGFVSRSPRWAIAHKFAAEQATTILKGIDIQVGRTGAMTPVARLE
PVTIGGVVVQNATLHNEDYIKGIGNDGQPIRDGVDLRVGDTVVVQRAGDVIPQVVSVVID
KRPNSAQPYAFPHTCPICGSHAVREEGEAVRRCTGALICPAQAVERLKHFVSRLAFDIDG
LGEKQIQEFHERGWIKEPADIFTLRERNPKIKLEELEGFGEVSVRNLFAAIDARRTIELN
RLIFALGIRHVGEGNAKLLARHYGGIDAFRAAMSEAAAAQTDDGNASEAYADLNNISGIG
DIVADAVVEFFAETRNVKALNDLLEEIEVLPVAQARNDSAVAGKTVVFTGSLEKFTRDEA
KASAERMGAKVSGSVSKKTDLVVAGPGAGSKLKDAEKHGVQVISEDEWLKLIEG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaaagcccaaaacgcctccgcccgtcgattccctcacgagggcgcaggcgaag
atcgagcacaagcggctcgcgctcgagatcgaaacgcataacgagcgctactaccagaag
gatgcgccgacggtttccgacgccgcctacgatgcgctgcggcagcggcttgaagcaatc
gaggcgcgcttccccgatctgattactgccaattcgccgactcagacggtcggcgccgcc
cccgcgcgcggcttcgcaaaggtgcagcacgcggtgccgatgctatcgctcggcaacgcc
ttcagcgacgaggaagtcgctgaattcgtcgaacgcatccagcgtttcctgaaacttggg
ccagacgacattcccgccatcgtcgccgagccgaagatcgacggactgtcgctgtcgcta
cgttatgaaaacggtgagcttgtgcgcgcggccacccgcggcgacggcttcaccggcgag
gacgtcactgccaatgtgcgtaccatcaaggacgttccgcacaacctaagaggccgcaac
atcccaaccgcctgcgagctgcgcggcgaagtttatatgctcaagaccgactttctcgcg
ctgaataaaaagcaggaggatgccggcgacaccgtattcgccaacccgcgcaactcggcc
gccggctcgctccggcagaaggatgttgcgatcaccgcgtcgcggccgctgaaattcttc
gcctatgcctggggcgagatgacggatcgacccgccgacacccaacacgacatgctggag
tggctcaaggacgtcggcttcaaagtcaatccgctgatcgaattgtgcaacagcgtcgag
aaggtgctgaagttctaccgcaagatcggcgagcagcgcgcttccctcggctacgacatc
gacggcgtcgtctacaaggtcgaccggctcgactggcaggagcgcctcggcttcgtgtcg
cgctcgccgcgctgggccattgcgcacaagttcgccgccgagcaggcgaccacgatcctc
aagggtatcgacatccaggtcggccgcaccggcgcgatgacgccggtggcgcggctcgaa
cccgtcaccatcggcggcgttgtcgtgcagaacgccacgctgcacaacgaagattacatc
aaaggcatcggcaatgacggccagccgatccgcgacggcgtcgatctccgcgtcggcgat
accgtggtggtgcagcgcgccggcgacgtgataccgcaagtggtcagcgtcgtcatcgac
aagcggccgaacagcgcacagccttacgcgtttccgcatacgtgcccgatctgcggcagc
cacgccgtgcgcgaggagggcgaggcggtgcgccgctgcaccggcgcgctgatctgcccg
gcgcaggcggtggagcggctcaagcatttcgtctcgcgtctcgccttcgatatcgacggt
ctcggcgagaagcagattcaggaatttcacgagcggggctggatcaaggagccggccgat
atcttcacgctcagggaacgcaatccaaagatcaagcttgaggagcttgagggctttggc
gaagtctcggtgcgtaacctgttcgctgcgatcgatgcgcgccgcacgatcgaactcaac
cggctaatcttcgcgctcggcatccgccacgtcggcgaaggtaatgccaaattactggcg
cggcattacggcggcatcgacgcattccgcgcggcgatgagcgaagccgctgcggcgcag
accgacgatggcaacgcctccgaggcctatgccgatctcaacaacatcagcggtatcggc
gatatcgtggctgacgcggtggtcgagttcttcgcggagacgcgcaacgtcaaggcgctg
aacgatctgcttgaggaaatcgaggtgctgccggtcgcgcaagcgcgcaacgattccgcc
gttgccggcaagaccgtggtgttcacgggctcgctggaaaaattcacccgcgacgaggcc
aaggcctcagccgagcgcatgggcgcgaaggtttcgggctcggtgtcgaagaagaccgat
ctcgtcgtcgccggccccggcgcgggatcgaagctgaaggacgcggagaagcacggcgtc
caggttatctccgaagacgagtggctaaagctgatcgaggggtag
DBGET
integrated database retrieval system
