Neorickettsia helminthoeca: NHE_0474
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Entry
NHE_0474 CDS
T03076
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nhm
Neorickettsia helminthoeca
Pathway
nhm03030
DNA replication
nhm03410
Base excision repair
nhm03420
Nucleotide excision repair
nhm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHE_0474 (ligA)
03410 Base excision repair
NHE_0474 (ligA)
03420 Nucleotide excision repair
NHE_0474 (ligA)
03430 Mismatch repair
NHE_0474 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nhm03032
]
NHE_0474 (ligA)
03400 DNA repair and recombination proteins [BR:
nhm03400
]
NHE_0474 (ligA)
Enzymes [BR:
nhm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NHE_0474 (ligA)
DNA replication proteins [BR:
nhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NHE_0474 (ligA)
DNA repair and recombination proteins [BR:
nhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NHE_0474 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHE_0474 (ligA)
MMR (mismatch excision repair)
DNA ligase
NHE_0474 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NHE_0474 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
5_3_exonuc
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AHX11416
UniProt:
X5H4C1
LinkDB
All DBs
Position
complement(424544..426538)
Genome browser
AA seq
664 aa
AA seq
DB search
MEVEKKIESLYKKLLLHNEKYYQDDNPEITDAEYDAIKSQYLELIKENPELEFPTIIGHP
PSEKFSKVEHLSPMLSLRNVFSEGEFIEYIQKTKRFLNTKENFEFLCEPKIDGVSFSACF
IDGKLHSCATRGDGYTGENITENINVISGFPTRIENAPKVLEVRGEVFIDHETFRRLEGF
SNPRNAAAGSLRQLDPEITKQRNLKYFAYSANELPTVRSQKEVLESLAANGFSTNSIKLL
SSNIEEIMDFYQSIYDKRADLTYDIDGLVYKINDIGLQKRLGISADAPRWAVAHKFPSYR
GKTVLEKIELSVGRTGIITPVGLLKPVTIGGVVVSRASLYNEDELKRKDIREGDLVTIER
AGDVIPKILAVDKAYRDKQQIFLFPEYCPSCSSKLLRKNNEAAIRCMNHKKCPDQLVQQV
KHLVSSQAFDIEGIGESHISFFINNGFVSELADIFRLERYKEAIKKYEGWGEKSVENLIQ
NIKKARNITLNRFIFSLGIKGIGEKTAYILAREYVSFKKWFSKMSALEGNIETETEIKNL
EGLGGSAYDSLKEFFADPDNQDIVKNLASRVVITDNTSNQKGSLNNKRFVFTGTLLSITR
DEAKEIVKNAGGIVLNAISKNADYLVAGEKAGSKLSRARELGITIIDEDDFKSLITQNLD
DRKT
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgaaaagaaaattgagagtctatataagaaacttctgctccataacgaaaag
tactatcaagatgataatccagagataactgacgcagaatatgacgccattaagagccaa
tatctagagctcatcaaagaaaatccggagttagaatttcctactatcattgggcatccg
ccctctgagaagttcagcaaagtagagcacttatctccgatgctttctttaaggaatgtt
ttctctgaaggagaattcattgagtatatccaaaaaacaaaaagatttttgaatactaag
gaaaattttgaatttctgtgtgaacccaaaatagatggagtatcattttccgcgtgtttt
attgatggtaaacttcattcctgtgcgacaaggggggatggttacacaggagagaatatt
acagagaatataaacgtcatttctggattccctacaagaatagagaatgcaccaaaagta
ttggaggtacgtggagaggtattcatcgatcacgaaacgtttcgccgactagagggtttc
tctaatccaaggaacgcagcagcgggttcattgaggcaattagatccagaaatcacaaaa
caacgtaatcttaagtactttgcttatagcgctaatgagctacctacagtaagatcacaa
aaagaagtactcgaatcactagccgcaaatgggtttagtacaaattccataaaattgctc
tcttccaatatagaagagatcatggatttttatcagtctatctatgacaagcgcgccgac
ctcacctacgacatagatggattggtctacaaaatcaatgatataggactacaaaaaagg
ttaggaatctcagccgacgcacctagatgggctgtggcgcataaatttccttcatatagg
gggaaaactgtactcgaaaaaatcgaactcagtgttggaagaacaggtatcattactccg
gtcggactcctcaagcctgtaaccataggtggagtagtagtctccagggccagcctgtac
aatgaagacgaactgaaaagaaaggatataagagaaggagatttagtcacaattgaaaga
gctggagatgtaataccaaaaatattagctgtggataaagcatatagggataaacaacag
atctttctctttcccgaatattgtccttcttgctcatctaaacttctaaggaagaataac
gaggcagcaatccgttgtatgaatcataaaaaatgcccagatcaattagtgcaacaggtg
aaacatcttgtttcgagtcaggcattcgacatagaaggcataggtgaatcacatatttca
tttttcatcaataacggctttgtcagtgaactagcagatatttttcgtctagaaagatat
aaggaagctataaaaaaatatgagggctggggtgaaaaatccgtagagaatttaattcaa
aatatcaaaaaagcacgcaatataacattaaatagatttatcttcagtcttggtataaag
ggtatcggggaaaaaacggcatacattttagcaagggaatacgtcagttttaagaaatgg
ttctccaaaatgtcagctttggagggcaatatagaaacggaaactgagataaaaaacctc
gaaggattgggaggctctgcatatgactcactgaaggaattctttgctgatccagataat
caggatatagtcaaaaacctcgcttctagggtcgtgatcactgataatacttccaaccaa
aagggctccttgaacaataaaagatttgtctttactggaactctgctctcaatcacaaga
gatgaggcaaaagaaatagtaaaaaatgcaggtggaatcgttttaaacgctatctcgaaa
aatgctgattacttagttgccggagaaaaagcaggctccaaactatcaagagcgagagaa
ttgggtataacaatcatagacgaggatgactttaaatcactgatcacacaaaatctagac
gacagaaaaacttag
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