Natronomonas halophila: HWV23_08450
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Entry
HWV23_08450 CDS
T07279
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nho
Natronomonas halophila
Pathway
nho03030
DNA replication
nho03410
Base excision repair
nho03420
Nucleotide excision repair
nho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWV23_08450 (ligA)
03410 Base excision repair
HWV23_08450 (ligA)
03420 Nucleotide excision repair
HWV23_08450 (ligA)
03430 Mismatch repair
HWV23_08450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nho03032
]
HWV23_08450 (ligA)
03400 DNA repair and recombination proteins [BR:
nho03400
]
HWV23_08450 (ligA)
Enzymes [BR:
nho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWV23_08450 (ligA)
DNA replication proteins [BR:
nho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWV23_08450 (ligA)
DNA repair and recombination proteins [BR:
nho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWV23_08450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWV23_08450 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWV23_08450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWV23_08450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
BRCT_2
DZR_2
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QLD85749
LinkDB
All DBs
Position
complement(1542187..1544274)
Genome browser
AA seq
695 aa
AA seq
DB search
MEEPEDNPYIRNPPFEFDPVEDLDEEAAERQVELLREAVRYHDYRYYQLADPVISDNAYD
DLFERLEALEEEFDLRSETSPTQRVGGEPVDELETVDHVTPMLSIDSSVEEEDVRDFADR
VHDRLAEADYDGPVQYLCEPKFDGLSVELVYEDGELQRAATRGDGEEGDDVTENVRTIRS
VPLQLTGDYPDFLAVRGEVFMPRDAFNEYNRERIERSDDPFANPRNAAAGTLRQLDPSVT
AERPLDCFVFDVLDDGDYGFERRIDEHQKVTEWGFHVDDHTRLVEDIDGAVEFRETMLEM
RDDLNYEIDGTVIKVDRKDACEVLGATSRAPRWAYAYKFPARTEVTTVRDIIVQVGRTGR
LTPVALLDKVEVAGVEVSRATLHNPEQIEELGVDIGDKVRLKRAGDVIPYIEEVVEAETE
GTFAFPDSCPVCGSPVEREGPMAFCSAGIDCEAQLRRLVEYYASQDGLDIEGLGEEAVNR
LVDEGLVESLPDLYDLSVEELADLDGWGETSAENLVSELEASTEPPLADFLSALGIPEVG
PTTAADLARQFGTLDAVMAADTEDLRVVEGIGPTMATEIAGFFNTERNREIIQELRDHGV
EPQEAEEAGEALDGLTFVFTGSLEGMTRDDAKELVEANGGAATSSVSSNTNYLVVGKNPG
TAKREDADEHDVPQIDQSEFEALLEDHGIDVDIDE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaccggaggacaacccctatatccggaacccgcccttcgagttcgaccccgtc
gaggacctcgacgaggaagcggccgaacggcaggtcgaactgttgcgggaggccgtccgg
tatcacgattatcgttactaccaactcgcggaccccgttatctcggataacgcctacgac
gacctttttgagcgattggaggcgctcgaagaggagttcgacctccggtccgaaaccagt
ccgacccagcgggtcggcggcgaacccgtcgacgaactcgaaaccgtcgaccacgtcacg
ccaatgctctctatcgactcctcggtggaggaagaagacgttcgggatttcgccgaccga
gtccacgaccgactcgcagaagcggactacgacgggccggttcagtacctctgtgagccg
aagttcgacggcctctccgtcgagttggtctacgaggacggcgaactccagcgggcggcc
acccgcggcgacggcgaggaaggcgacgacgtgaccgagaacgtccggaccatccggtcg
gtcccgctgcaactcaccggcgactaccccgacttcctggccgtccgtggggaggtgttc
atgccccgggacgccttcaacgagtacaaccgcgaacgcatcgagcgcagcgacgacccc
ttcgcgaacccccggaacgcggcggcgggcacgctccggcagttggacccctcggtgacc
gccgaacgccccctcgactgtttcgtcttcgacgtactggacgacggcgactacggcttc
gagcgccgcatcgacgaacaccagaaggtgactgagtggggttttcacgtcgatgaccac
acccgactcgtcgaggacatcgacggcgccgtcgagttccgtgagacgatgctggagatg
cgggacgacctcaactacgaaatcgacggcaccgtcatcaaggtcgaccgtaaggacgcc
tgcgaggtgttgggggcgacctcgcgggcgccgcgatgggcctacgcctacaagtttccc
gctcggaccgaggtgacgacggtccgggacatcatcgtgcaggtcggccgaacggggcgc
ctgacgccggttgcgctgctggacaaggtcgaagtcgcgggcgtcgaggtctcgcgagcg
accctgcacaatcccgaacagatcgaggaactgggcgtcgatatcggcgacaaggtccga
ctcaagcgcgcgggcgacgtcatcccctacatcgaggaggtcgtcgaggccgaaaccgag
ggtaccttcgcgttccccgattcgtgtccggtctgtggcagtccggtcgaacgggagggg
ccgatggcgttctgctcggcgggcatcgactgtgaggcacagcttcggcggctcgtcgaa
tactacgcctcacaggacggtctcgatatcgaaggcctcggcgaggaggcggttaaccgg
ttggtcgacgagggcctcgtcgagagcctgccggacctctacgacctgtcggtcgaggaa
ctggccgacctcgacggctggggggagacgagcgccgagaacctcgtttcggaactcgag
gcgagcacggagccgccgctggcggatttcctctcggcgctcggtatccccgaagtcggg
ccgacgacggcggcggacctcgcccgacagttcgggacgctggatgcggtgatggctgcc
gataccgaggacctgcgggtagtcgagggtatcggcccgacgatggccaccgagatcgcg
ggcttcttcaacaccgagcggaaccgcgagataatccaggagctacgcgaccacggcgtc
gaaccgcaggaagccgaggaagccggcgaggcgcttgacggcttgaccttcgtcttcacg
gggtcgctggaggggatgacccgcgacgatgccaaggaactcgtcgaggccaacggcggc
gccgccacctccagcgtctccagcaacacgaattacctcgtggtcgggaaaaatccggga
acggccaagcgggaagacgccgacgaacacgacgtgccgcaaatcgaccaatcggagttc
gaggcgctgctggaagaccacggtatcgacgtcgatatcgacgaatag
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