Natronosporangium hydrolyticum: JQS43_19020
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Entry
JQS43_19020 CDS
T07914
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nhy
Natronosporangium hydrolyticum
Pathway
nhy03030
DNA replication
nhy03410
Base excision repair
nhy03420
Nucleotide excision repair
nhy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQS43_19020 (ligA)
03410 Base excision repair
JQS43_19020 (ligA)
03420 Nucleotide excision repair
JQS43_19020 (ligA)
03430 Mismatch repair
JQS43_19020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nhy03032
]
JQS43_19020 (ligA)
03400 DNA repair and recombination proteins [BR:
nhy03400
]
JQS43_19020 (ligA)
Enzymes [BR:
nhy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JQS43_19020 (ligA)
DNA replication proteins [BR:
nhy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JQS43_19020 (ligA)
DNA repair and recombination proteins [BR:
nhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JQS43_19020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQS43_19020 (ligA)
MMR (mismatch excision repair)
DNA ligase
JQS43_19020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JQS43_19020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
HHH_8
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QSB13650
UniProt:
A0A895YHM0
LinkDB
All DBs
Position
complement(4269841..4272084)
Genome browser
AA seq
747 aa
AA seq
DB search
MPTRPVIRSACAGATAEPASTRLSAQVTAVSRAWLSEPAASVRGVDAPGESPEAERAAGV
EPPSAARERHAELAKDIEDHRYRYYVLDAPTISDGAFDELMRELEALEVEFPALRTPDSP
SQRVGGSYATEFTPVAHIEPMMSLDNGFHPAEMAAWVQRVQRESGDEAVRFLCEPKVDGL
AVNLTYRDGRLVQAATRGDGRTGEDVTYNVRAIKRVPNQLVGADIPALLEVRGEIYFPLA
AFGELNAWLVEQGRDPFANPRNAAAGSVRQKDPKVSAARPLAMVVHGLGAREGLAPATQS
EAYELLARWGLPTSDRWRVVDGLAGVEEYITYYAEHRHDLEHEIDGVVVKVDRWDLQGRL
GATSRAPRWALAYKYPPEEVNTVLRDILVNVGRTGRVTPYAELAPVRVAGSTVTFATLHN
AREVVRKGVLIGDTVVIRKAGDVIPEVLGPVAELRPDDAREFVMPSHCPECGSQLAPAKE
SDVDIRCPNQRSCPAQLRERVFHLAGRGAFDIEMLGYKAAAALLESGVITDEGELFALDE
AALTRSEFFVNKDGSLGSNGDKLLKNLAVAKRQPLWRVLVGLSIRHVGPTAAQALAAEFG
SIEAIEAASEEELAAVDGVGPTIAASLREWFAVQWHREVVRKWREAGVRMAEERPAAGPR
PLAGLTLVVTGTLAGYSRDQATAAVTGQGGKVTSSVSKKTSYLVAGDNPGSKYDKARSLG
VPVLDEAGFATLLAEGPEAVAPATEPE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccggccggtcatccgttctgcctgtgctggggcgacggctgagccagcctcg
acgcggctctcagcgcaggtcacggcggtgtcgcgagcgtggctgtcggagccggccgct
agcgtacgaggggtggacgcaccaggagagagccccgaggccgagcgtgcggcgggtgtc
gagccgccgtcggccgcccgggagcggcacgctgagctggccaaggatattgaggaccac
cgctaccgctattacgtgctggacgcgccgacgatctcggacggtgcctttgacgagctg
atgcgggagctggaggcgctggaggtcgagttcccggcgctgcggacccccgattcccct
agccaacgggtgggcggcagctacgctaccgagttcaccccggtcgcccacatcgagccg
atgatgtcgctggacaacggcttccacccggcggagatggcggcctgggtgcagcgggtc
cagcgggagtcgggcgacgaggcggtccggttcctctgcgagccgaaggtcgacgggttg
gcggtcaacttgacctaccgggacggtcggttggtgcaggcggcgacccgtggcgacggc
cgcaccggcgaagacgtcacctacaacgtgcgggcgatcaagcgagtcccgaaccagctg
gtcggggcggatatcccggcgttgttggaggtccggggggagatctactttccgctcgcc
gcgttcggcgagctgaacgcgtggctggtggagcaggggcgggacccgttcgccaaccct
cgtaacgccgccgccggcagcgtccggcagaaggacccgaaggtcagcgccgcccggccg
ttggcgatggtggtgcacggtctgggggctcgggaggggctcgccccggctacccagtcc
gaggcgtacgagttgctggcgcgatgggggttgccgacgagcgaccggtggcgagtggtg
gacgggctagccggggtggaggagtacatcacctactacgcggagcaccggcacgacctg
gagcacgagatcgacggtgtggtggtgaaggtcgaccggtgggatctgcagggccggttg
ggcgccaccagccgcgccccgcgctgggcgttggcttacaaataccccccggaggaggtc
aacacggtcctccgcgacatcttggtcaacgtgggccggaccggccgggtcacgccgtac
gcggagttggcgccggtccgggtcgctggctcgacggtcaccttcgccaccctgcacaac
gctcgcgaggtggtccggaagggcgtgttgatcggcgacacggtggtgatccgcaaggcc
ggggatgtcattccggaggtgctggggccggtggcggagctgcgccccgacgatgcgcgg
gagttcgtcatgcccagccattgcccggagtgcgggtcgcagctggcaccggcgaaggag
agcgatgtcgatatccggtgtccgaatcagcgcagctgtccggcgcagttgcgggagcgg
gtcttccacctggccggtcggggcgccttcgacatcgagatgctgggttacaaagcggcc
gccgcgctgctggaatctggcgtgatcaccgatgagggggagctgttcgcgctcgatgag
gccgcgctgacccggtccgagttcttcgtcaacaaagacggttcgttgggcagcaacggt
gacaaactgctgaaaaacctggctgtcgcgaagcggcagccgttgtggcgggtgctggtg
gggctttcgattcggcatgtcgggccgaccgcggcccaggcgttggcggccgagttcggc
tcgattgaggcgatcgaggcggcgagtgaggaggagttggcggcggtggacggggtcggg
cccaccatcgccgccagcctccgggagtggttcgcggtccagtggcatcgggaggtggtg
cgcaagtggcgcgaggccggggtccggatggcggaggagcggccggccgccggtccgcgc
ccgttggccggcctcacgctggtggtgaccgggacgctcgccggctactcccgggatcag
gcgactgcggcggtgaccgggcagggtggcaaggtgacgagctccgtgtcgaagaagact
tcatacctggtggcgggggacaatccaggcagtaagtacgacaaggctcgctcgctcgga
gttccggtgctcgacgaggccgggttcgcgactctgctggcggagggtccggaggcggtg
gcgccggccaccgagccggagtag
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