Nocardia iowensis: KV110_31020
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Entry
KV110_31020 CDS
T07470
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nie
Nocardia iowensis
Pathway
nie03030
DNA replication
nie03410
Base excision repair
nie03420
Nucleotide excision repair
nie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KV110_31020 (ligA)
03410 Base excision repair
KV110_31020 (ligA)
03420 Nucleotide excision repair
KV110_31020 (ligA)
03430 Mismatch repair
KV110_31020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nie03032
]
KV110_31020 (ligA)
03400 DNA repair and recombination proteins [BR:
nie03400
]
KV110_31020 (ligA)
Enzymes [BR:
nie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KV110_31020 (ligA)
DNA replication proteins [BR:
nie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KV110_31020 (ligA)
DNA repair and recombination proteins [BR:
nie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KV110_31020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KV110_31020 (ligA)
MMR (mismatch excision repair)
DNA ligase
KV110_31020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KV110_31020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
QXN89854
UniProt:
A0ABX8RLQ1
LinkDB
All DBs
Position
complement(6718738..6720870)
Genome browser
AA seq
710 aa
AA seq
DB search
MSDSGAVENDASAAAPATAEQRVEWQRLADEVREHQFRYYVRDAPIISDGEFDALLRRLQ
AMEEEHPDLLTPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFDFDELRTWAGRVEAETG
SNLHYLCEVKIDGVALNLVYENGRLVRGATRGDGRTGEDVTLNARTIDDIPGELTPSAEF
PIPALLEVRGEAYMRLEDFETLNAAIVAEGKPPYANPRNTAAGSLRQKDPSITARRRLRM
ICHGFGRMEGYTPSSQHEAYRALAAWGLPVSEHTKLVQGIDAVIERVEYWGEHRHDIEHE
IDGQVIKVDEMALQRRLGSTSRAPRWAIAYKYPPEEATTKLLNIEVNVGRTGRVTPFAVM
EPVSIAGSTVSMATLHNASEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAEREFV
MPTHCPECGTELAPQKEGDADIRCPNSQFCPAQLRERVFHVAGRGAFDIESLGYEAANDL
LKSGAITDEGDLFDLDEPTLLTTTLFANKDGGLSANGKRLLENLRAAKNRPLWRVLVGLS
IRHVGPTAARVLAREFGSLDRIQDASAEELAAADGVGPTIAAAVAEWFTVDWHRAIVDKW
RAAGVRMADERDESIQRTLEGLSIVVTGSLEGFSRDGAKEAILVRGGKAAGSVSKKTAFV
VVGDSPGTKAAKAEELGVPILDEDGFRLLLESGPEAVSPAAASEDSEAEE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacagcggtgcggtggagaatgacgcgagcgcggcggcgccggcgacggccgag
cagcgggtggagtggcagcgactggcggacgaggtgcgcgagcatcagttccgctactac
gtgcgcgacgcgccgatcatttccgacggcgagttcgacgcgctgctgcgccggttgcag
gcgatggaggaagagcatcccgatctgctcacccccgactcgccgacccagctggtcggc
ggtgggttcgcgaccgacttcaccgcggtcgaccatctcgagcggatgctgtcgctggac
aacgtgttcgacttcgacgagctgcgcacctgggccggccgggtggaggccgagaccggg
tccaacctgcactatctgtgtgaggtgaagatcgacggcgtcgcgctgaacctggtctac
gagaacgggcggctggtgcgcggcgccacccgcggcgacgggcgcaccggcgaggacgtc
accctgaacgcccgcaccatcgacgacatccccggtgagctcacgccttccgccgaattt
ccgattccggcgctgctcgaggtgcgcggcgaggcgtacatgcggctggaagatttcgag
acgctcaacgcggcgatcgtggccgaaggcaaaccgccgtacgccaacccgcgcaacacc
gccgcgggctcgctgcggcagaaggacccgtcgatcaccgcccggcgcaggttgcggatg
atctgccacggtttcggccgcatggagggctacacgccgtcctcgcagcacgaggcctac
cgcgcgctcgccgcctggggtctgccggtctccgaacacaccaaactcgtgcagggcatc
gacgccgtcatcgaacgcgtcgaatactggggtgagcaccgccacgatatcgagcacgag
atcgacggccaggtgatcaaggtcgacgagatggcgctgcagcgcaggctcggctccacc
tcgcgggccccgcgctgggcgatcgcctacaagtacccgccggaggaggcgaccaccaag
ctgctgaatatcgaggtgaacgtcggccgcaccggccgggtcaccccgttcgcggtgatg
gaaccggtctccatcgcgggttccacggtctcgatggccacgctgcacaatgcctcggag
gtcaaacgcaagggcgtgctgatcggcgacacggtcaccatccgcaaggcgggcgacgtg
atcccggaggtgctcggcccggtggtcgacgcacgcaccggcgccgagcgcgaattcgtg
atgccgacgcactgcccggaatgcggcaccgaattggcgccgcagaaggagggcgacgcc
gatatccgctgccccaactcgcagttctgcccggcccagctgcgggagcgggtgttccat
gtggccggtcgcggcgccttcgacatcgaatcgctcggctacgaggcggcgaacgatctg
ctgaagtcgggcgcgatcaccgacgagggcgatctgttcgacctcgacgagccgaccttg
ctcaccaccacgctgttcgccaacaaggacggcggactgtccgccaatggcaaacggctg
ctggaaaacctgcgtgcggcgaagaatcgaccgctgtggcgggtgctggtcggcctgtcc
atccggcacgtcggccccaccgccgcccgagtgctggcgcgcgaattcggcagcctcgac
cggatccaggatgcctcggccgaggaattggccgccgccgacggtgtcgggcccaccatc
gccgcggcggtcgcggaatggttcaccgtcgactggcaccgcgcgatcgtcgacaaatgg
cgcgccgcgggcgtgcggatggccgatgaacgcgacgaatccatccagcgcaccctggaa
ggcctgtcgatcgtggtgaccggctcgctggaagggttctcccgcgacggcgccaaggag
gcgatcctggtgcgcggcggaaaggccgcgggttcggtctcgaagaagaccgcgttcgta
gtggtcggtgattcgccggggacgaaggccgccaaggccgaggaactcggtgtgccgatc
ctcgacgaagacgggttccgattgttgctggagtccgggccggaagcagtgtcaccggca
gcggcgagcgaggattccgaagcggaagagtaa
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