Nitrospira sp. KM1: W02_05520
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Entry
W02_05520 CDS
T08344
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nif
Nitrospira sp. KM1
Pathway
nif03030
DNA replication
nif03410
Base excision repair
nif03420
Nucleotide excision repair
nif03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
W02_05520 (ligA)
03410 Base excision repair
W02_05520 (ligA)
03420 Nucleotide excision repair
W02_05520 (ligA)
03430 Mismatch repair
W02_05520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nif03032
]
W02_05520 (ligA)
03400 DNA repair and recombination proteins [BR:
nif03400
]
W02_05520 (ligA)
Enzymes [BR:
nif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
W02_05520 (ligA)
DNA replication proteins [BR:
nif03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
W02_05520 (ligA)
DNA repair and recombination proteins [BR:
nif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
W02_05520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
W02_05520 (ligA)
MMR (mismatch excision repair)
DNA ligase
W02_05520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W02_05520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
Zn_ribbon_PADR1
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BCA53412
UniProt:
A0A679HWS1
LinkDB
All DBs
Position
complement(571935..573941)
Genome browser
AA seq
668 aa
AA seq
DB search
MSDVQTRIAALRDLIRGHDYLYYVKDKPEISDAEYDRLFKELTELEQTHPELMRPDSPTQ
RVGAPPLEALVKVRHEKPMLSLDSILNADEVLAFDQRMKRELGVQSVDYTAEPKFDGLSV
ELVYQNGAFIQGSTRGDGTIGEDITTNLRTIRSLPLQLVAGSGYPARLVVRGEVYMRLND
FQALNRRMTERGEEAFANPRNAAAGSLRQLDSSITASRPLVVTCYEVTSRSEGAASTHWQ
EFEDLSAWGIPVPLSRLRCSTIEEVITYHHETAEMRDSLPYEIDGVVVKVDRRQWQEKLG
FKSRSPRWAIAYKFSPRKETTVIEDIAVSVGRTGTLTPLALLKPVEVGGVTISRATLHNA
DEVARKDVRVGDTVKIERAGDVIPAVSERVSVPGEQRAAPFQMPADCPICHSAVAREGAY
YYCTGQMVCGAQIKGAIEHFASKAALNINGLGRKTVAQLVDHHLVRTVADLYRLTKDDLL
GLEGFADRSAALLLQGITASKDVTLDRFLMGLGIRQVGQHIAKVLARTFGTLGSIMTADK
ERFQRVPEIGPEISSSLASYFSEPQNRRVIDELLKTGFRIESDTPSVGQNAPLAGVTFVF
TGGLGKLTREDAARLVESKGAKVSSSVSKKTSYVVAGTDAGSKLEQARKLGITVLSEQEF
SDLVQGEG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgttcaaacacgcattgcggcgttgagagacctcatcagaggtcatgactat
ttgtattatgtcaaagacaagccggagatctctgacgccgagtacgaccgtctctttaaa
gagctgaccgaactcgaacagacgcatcctgaactgatgaggccggactcccccactcaa
cgagtgggtgctccacctcttgaagccttggtcaaggtccggcatgagaagccgatgctc
agcctggactcaatcctgaacgccgatgaggttctggcgtttgaccagcgaatgaagcgc
gaactcggcgtccaatcggtcgattatacggccgaaccaaaatttgacgggttatccgtt
gagttagtgtaccaaaacggggcgttcatccaaggttcgacaagaggtgacggcacgatc
ggtgaagatattacgaccaatctccgcactatccgttcgttgccgctccaattggttgct
ggatccggatatccagcccgcctagtggtgcgaggtgaggtgtacatgaggctgaatgat
tttcaggcccttaaccggcgcatgactgagcgaggcgaagaagcctttgccaatccacgc
aatgcagcggccggctcgcttcgacaattggactcctcaatcaccgcctccagacccctc
gtcgtcacctgctacgaagtgacaagtcgttctgagggagcagcctctactcattggcag
gaatttgaagatttatcggcctggggtattccggttccgctcagccgattgcgttgctcc
acgattgaagaggtcatcacctatcaccatgagacggccgagatgcgggactccctgcca
tatgagatcgatggcgtggttgtcaaggtcgaccgccgccaatggcaggaaaaactcgga
ttcaagtcgcggagtcctcgttgggcgatagcctacaagttcagtccgagaaaagagacg
acggtcatcgaggatattgctgtgtccgtcggccgcaccggtacgctcactcccctggcc
ttgcttaagccggtcgaagtcggcggggtgaccatcagccgtgcgactcttcacaatgcg
gacgaagtggcaaggaaagatgtgcgggtcggcgacaccgtgaagatcgaacgtgccgga
gatgtcattccagccgtatcggaacgggtttctgtgccgggtgaacagcgtgcggctccg
ttccaaatgccggcggattgtcccatctgtcattcggccgtggcccgggagggagcctac
tactattgcaccggacaaatggtctgtggtgctcagatcaagggggcgattgaacatttc
gcctcaaaggcggcactgaatattaacgggttgggaagaaaaacggtggctcaactcgtc
gaccaccatcttgtacgcactgtcgctgatctatatcgcttgacgaaggatgacttgctt
ggcttggagggattcgccgatcgttcggctgcgctgcttctgcagggcatcacggccagc
aaggatgtgacactcgatcgattcctcatggggctcggcatcagacaggttggacagcac
attgccaaagtgctcgcgaggacgttcggcacgctcgggtcgatcatgaccgcggacaaa
gagcgatttcagcgagtgcctgagataggtccggaaatttcgtcgagtctggcctcgtac
ttttccgagccacagaatcgccgagtgatcgatgaactgctcaagacgggattccgcatc
gaatcggatacgccatctgttgggcagaatgctccgcttgcaggcgtgactttcgtgttt
accggcgggcttggaaaactgacaagagaagacgccgcgcgattggtggagagcaaagga
gcaaaagtttcttccagcgtgagcaaaaagaccagctacgtggtggctgggaccgatgca
ggatcaaaactcgaacaggcgaggaagctcggcatcaccgtgttgagtgaacaggaattt
tcagatcttgttcaaggagagggctga
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integrated database retrieval system
