Nissabacter sp. SGAir0207: C1N62_04485
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Entry
C1N62_04485 CDS
T09781
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nig
Nissabacter sp. SGAir0207
Pathway
nig03030
DNA replication
nig03410
Base excision repair
nig03420
Nucleotide excision repair
nig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1N62_04485 (ligA)
03410 Base excision repair
C1N62_04485 (ligA)
03420 Nucleotide excision repair
C1N62_04485 (ligA)
03430 Mismatch repair
C1N62_04485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nig03032
]
C1N62_04485 (ligA)
03400 DNA repair and recombination proteins [BR:
nig03400
]
C1N62_04485 (ligA)
Enzymes [BR:
nig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C1N62_04485 (ligA)
DNA replication proteins [BR:
nig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C1N62_04485 (ligA)
DNA repair and recombination proteins [BR:
nig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C1N62_04485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1N62_04485 (ligA)
MMR (mismatch excision repair)
DNA ligase
C1N62_04485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C1N62_04485 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
PP2C_2
Motif
Other DBs
NCBI-ProteinID:
QCR35399
UniProt:
A0A4P8SGH8
LinkDB
All DBs
Position
1034852..1036879
Genome browser
AA seq
675 aa
AA seq
DB search
MESIIQQINQLRASLRHHEYQYHVLDAPEIPDAEYDRLMRELRELETAHPELITADSPTQ
RVGAAPLTAFEQVRHEVPMLSLDNVFDEESYLAFNKRVQDRLKSADTLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLTGDNIPRRVEVRGEVFMPQRG
FEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPRSHW
QRLMQFREWGLPVSDRIRLCNGSEEVLAFYHQIEQARTGLGFDIDGVVIKVDSLDLQEAL
GFVARAPRWAIAFKFPAQEQVTTVRDVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLSERPEHVREVTFPTACPVCGSDVERVEG
EAVARCTGGLFCGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLSAG
VLTGLDRMGPKSAQNLVNALQKAKETTLARFLYALGIREVGEATAANLAAHFGSVEALRA
ADLEALKSVQDVGDIVAKHVRNFLEEAHNQQVIDELLDPAIGIHWPAVQVIVPEEIDSPF
AGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIE
VIDEAEMVRRLDASA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgatcattcaacaaatcaatcaactgcgggcctcactgcgccaccacgaatac
cagtaccatgtccttgacgccccagagatcccagatgccgaatatgaccggctgatgcgc
gagctgcgcgagctggagacggcgcacccggagctgatcaccgctgactcaccgacccag
cgggtcggggccgcgccactcaccgcctttgagcaggtgcgccatgaggtgccgatgctg
tcgctggacaacgtcttcgacgaggagagttatctggcgttcaacaagcgggtgcaggat
cgcctgaagagtgccgataccctgaccttctgttgcgaactgaagctggatgggctggcg
gtcagcctgctgtatgaagatggggagctggtgcgcgccgccacccgcggcgacggcacc
accggcgagaacatcaccgccaacgtgcgtaccatccgcgccatcccgctgcgcctgacc
ggtgacaatatcccgcgccgggtggaagtacgcggcgaggtgttcatgccgcagcgcggc
tttgaggcgttgaatgaggaggcgcgccgcacgggcggcaaggtgttcgccaacccgcgc
aacgccgcggctggctcactgcgccagctggatccgcgcatcaccgccaagcgcccgctg
accttcttctgctacggcgtcggtgtgctggagggcggcgagctgccgcgcagccactgg
cagcggttgatgcagttccgcgaatggggcctgccggtcagtgaccgcatccgcctgtgc
aacggcagcgaggaagtgctggcgttctaccaccagattgagcaggcgcgcaccggcctt
ggttttgacatcgatggcgtggtgatcaaggtggactccctcgatctgcaagaggcgctc
ggctttgtcgcgcgtgcgccgcgctgggccatcgcctttaaattcccggcgcaggagcag
gtgaccactgtccgcgacgtggagttccaggtcggccgcaccggcgccatcacgccggtg
gcgcggctggagccggtattggtggcgggcgtgacagtgagtaacgccacgctgcacaac
gccgatgagattgagcgcctcggtttgcgcatcggtgacaccgtgattgtgcgccgcgct
ggcgacgtcatcccgcaggtggtgggggtggtgttgagcgagcgcccggagcacgtgcgt
gaggtgacgttccccaccgcctgcccggtctgtggctctgacgtggagcgcgtggagggc
gaagcggtggcgcgctgcaccggcggcctgttctgtggtgcgcagcgcaaggagtcgctc
aagcactttgtctcgcgccgggcgatggacgtcgatggcatgggcgataaaatcatcgac
cagctggtggagaaggagtacgtcaagacgcccgccgatctcttccgcctgagcgctggc
gtgctgaccgggctggatcgtatggggccgaagtcggcgcagaatctggtcaacgcgctg
caaaaggccaaagagaccacgctggcgcgtttcctctatgcgctgggcatccgtgaggtg
ggcgaggcgaccgccgccaacctggcggcgcactttggctcggtggaggcgctgcgtgcc
gccgatctggaggcgctcaaaagcgtgcaggacgtgggcgacatcgtggcgaagcatgtg
cgtaacttcctggaggaggcgcacaaccagcaggtgattgacgagctgctcgacccggcc
atcggcatccactggccggcggtgcaggtgattgtgcctgaggagattgacagcccgttc
gcgggcaagaccgtggtgctgaccggctcgctcagcatcctgtcgcgtgacgaggccaag
gatcgcctgacggcgctgggtgccaaggtgagcggcagcgtgtcgaagaaaaccgatctg
ctgatcgcgggagaggcggctggctcgaaactggccaaggcgcaggagctggggattgag
gtgattgatgaggcggagatggtgcgccggctggacgcctccgcatga
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