Candidatus Nitrotoga sp. AM1P: W01_05980
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Entry
W01_05980 CDS
T06613
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03030
DNA replication
nim03410
Base excision repair
nim03420
Nucleotide excision repair
nim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
W01_05980 (ligA)
03410 Base excision repair
W01_05980 (ligA)
03420 Nucleotide excision repair
W01_05980 (ligA)
03430 Mismatch repair
W01_05980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nim03032
]
W01_05980 (ligA)
03400 DNA repair and recombination proteins [BR:
nim03400
]
W01_05980 (ligA)
Enzymes [BR:
nim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
W01_05980 (ligA)
DNA replication proteins [BR:
nim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
W01_05980 (ligA)
DNA repair and recombination proteins [BR:
nim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
W01_05980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
W01_05980 (ligA)
MMR (mismatch excision repair)
DNA ligase
W01_05980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W01_05980 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
EHD_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BBJ22671
LinkDB
All DBs
Position
complement(677042..679093)
Genome browser
AA seq
683 aa
AA seq
DB search
MSESVPQRIAHLRGEIERHNYQYHTLDAPLITDAEFDAMFRELQTLEIQYPSLATPDSPT
QRVGAVPLLSFAKVVHRSPMLSLNNAFNEEEVRAFDARTRETLGVTEVEYSVEPKFDGLA
VTLTYRDGIFVQGATRGDGEVGEDVTQNLRTIRNLPLRLGSESLTKPIPFIEIRGEVLMF
KVDFIALNREQTDRGDKLFANPRNAAAGSLRQLNSRITSSRHLSFLAYGAGAVEGFTLPD
THAGQLECLKKLAVPVPQQRRIVHGVDGLLAYYREIGELRHKLPYEIDGVVYKVNNISQQ
IKLGYVSRAPRFALAHKFPAEEALTTVLDIEVQVGRTGALTPVARLAPVFVGGVTVTNAT
LHNEEELRRKDIRIGDTVSVRRAGDVIPEVARVLLERRPADAREFNMPRSCPVCGAQVTK
QPDEAIWRCSGGLFCPAQRKQALWHFASRRALDIEGLGEKLIDQLVEQQLVLTPADLYNL
YKLNLQALAQLERMGEKSAQNLLDAIENSKQTTLARFIYALGIRNVGEATAKELARHFAT
LDNFMTADETRLQLVPDIGPIVAQSISTFFAEPHNIEVITQLRAAGVQWPEQAEKAVQVL
PLNAKIFVLTGTLTSMSRDEAKSRLETLGARVTGSVSQKTDYVVAGAEAGTKLSKAQQLN
IAVLDEQQFLQLLSTNEMPLATA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatcggtgccgcagcgtatcgcgcatttgcgtggggaaattgagcgacacaat
tatcaatatcatacgttggacgctccactgattaccgacgcggaatttgatgcaatgttc
cgtgaactacaaactctcgaaatacaatatccctcactcgctacaccggactcgcctacc
cagcgagtcggtgctgtgccgctgctttcctttgccaaagtagtacatcgctcgccgatg
ctttcacttaacaatgcttttaatgaagaagaggtgcgggcatttgatgctcgtacccgc
gagacattgggcgtgaccgaagtagaatattcagtagaacctaaatttgatggcctggcc
gttacgctcacctatcgcgatggaatatttgtgcaaggcgctacgcgcggcgatggcgag
gttggtgaagatgtgacgcaaaacctgcgtaccataaggaatcttccattgcgattgggc
tcagagagcttaaccaaacccattccgtttatagagatacgcggcgaggtgctgatgttc
aaggttgattttatcgcgctgaatcgcgaacaaacagacaggggcgacaaactgttcgcc
aatccacgcaatgccgcggcaggctcgttgcgccagctcaattcgcggattacatccagt
cgccacctaagttttttagcctatggagcaggcgcggtcgaaggctttaccttgcctgat
acgcatgccgggcagttggaatgtttgaaaaagttggcagtgccggtgccacagcaacgc
cggatagtgcacggagttgacgggttacttgcctattatcgtgaaattggtgagcttcgc
cacaagctgccctacgaaattgacggcgtagtatataaagtcaataacatctcccaacaa
atcaaattgggctatgtgtcacgggcaccgcgctttgcgcttgcgcacaagtttccggca
gaagaagcattaaccaccgtcctggacattgaggtgcaggtgggccggactggcgcattg
actccagtagcgcgcctggcacctgtatttgtcggtggggtaacggtgaccaatgccacg
ttgcacaatgaagaagaattgcgtcgcaaggatatccgcatcggcgatacggtaagcgtc
cggcgtgccggcgatgtcattccagaagtggcgcgtgtcttacttgagcggcgtcctgcg
gatgcgcgtgaattcaatatgccgcggtcctgtccagtatgtggtgctcaggttaccaaa
cagccggatgaggcaatatggcgctgcagtggcgggctgttttgcccggcacaacgcaag
caggcgctgtggcatttcgctagtcgtcgtgccctggatatagagggactgggcgagaag
ctgattgaccaactggtggagcagcaattggtgcttacgcctgccgatttatataattta
tataaattgaatttgcaggcactggcccaactggagcgcatgggtgagaagtccgcccaa
aacttgttggatgcaatagaaaacagtaagcaaactacactcgcgcgtttcatttatgcg
cttggtatccgtaatgtgggcgaggcaacggcgaaagaattggcgcgtcattttgctacg
ctggataattttatgacagccgacgaaacacgcctgcaacttgtaccagatatcgggcct
attgttgcgcaaagtatttcaacgttttttgccgagccgcataacattgaggtgatcacc
caattacgcgctgctggcgtgcagtggccggagcaagccgaaaaggcagtgcaggtatta
cctttgaacgctaaaatttttgtattaaccggtacgcttaccagcatgagtcgcgacgag
gcaaaatcgagattggaaacgcttggtgcgcgcgtgacgggtagcgtgtcgcagaaaact
gattatgtagtggctggcgctgaggcgggtaccaagcttagcaaagcacaacaattaaat
attgctgtactggatgaacaacaatttttgcaactattaagcacaaacgaaatgccatta
gccactgcctaa
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