Nitrosomonas sp. AL212: NAL212_2412
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Entry
NAL212_2412 CDS
T01443
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nit
Nitrosomonas sp. AL212
Pathway
nit03030
DNA replication
nit03410
Base excision repair
nit03420
Nucleotide excision repair
nit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NAL212_2412
03410 Base excision repair
NAL212_2412
03420 Nucleotide excision repair
NAL212_2412
03430 Mismatch repair
NAL212_2412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nit03032
]
NAL212_2412
03400 DNA repair and recombination proteins [BR:
nit03400
]
NAL212_2412
Enzymes [BR:
nit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NAL212_2412
DNA replication proteins [BR:
nit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NAL212_2412
DNA repair and recombination proteins [BR:
nit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NAL212_2412
NER (nucleotide excision repair)
GGR (global genome repair) factors
NAL212_2412
MMR (mismatch excision repair)
DNA ligase
NAL212_2412
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NAL212_2412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ADZ27228
LinkDB
All DBs
Position
complement(2391873..2393906)
Genome browser
AA seq
677 aa
AA seq
DB search
MNEGIEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITAD
SPTQRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRVCEGLAVDNVEYAVEPKFD
GLAVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEVLML
RADFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCHMPL
DKHSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNSLAQ
QERLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTVTNA
TLHNADEIERKDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVFVMPEHCPVCGAKAV
RLVDEAVSRCTGGLFCPAQRKQAILHFASRRAMDIEGLGDKLVEQMVDRAIIRTPADLYK
LGLGALADLERMAEKSAGNILRAIEKSKHTTLARFIYALGIRNVGEATAKDLAAHCGSLD
RLIEAGSERLQQIPDVGPVVAQSIADFFAEAHNREVIEQLRACGVYWNEHEGISVLAGEA
RPLQGKTFVLTGTLPIMSREEAKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSL
GIAVLDEAGLLELLQER
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaggaatcgagaaaataaggcaccgcatacaagatttacgcgccgagatcgag
ttgcacaattaccggtattacgtattggacactccaaccattcccgatgccgaatatgac
agactattgcgcgagttgcagcacattgaacaagactatccgcaactaataacagccgat
tcccccacacaacgtgtgggtgcggccccactcaaagctttttcgcaagttgtgcatcgt
aggccgatgctatcgctgagtaatgcgtttgacgatgccgaagtggaagctttcgatcgg
cgcgtgtgtgaagggttggcagtggacaatgtcgaatatgcggtagagccgaaatttgac
ggactggctgtcagtttatgttatgaaaatggaatttttaaaaccggtgcgacacgtggc
gatggctatacgggcgaaaatatcacactgaatctgagaacgattcgatcgattcctttg
tcgctgccggtcttaaatccgccatcatggctggaagtgagaggcgaagtattaatgttg
agagcggatttcctggctttgaatcagcgtcaatccgctaaaggtgaaaaagaatttgcc
aatccgcgcaatgcggcagcagggtcgttacgtcaactggatcctggtattaccgcaacc
cggcgtttaactttctttgcttatggcgttggagaatatcaggattgccacatgccgctg
gataaacacagtcatgtaatggcctatcttgcgtcgttacattttcccattgccaaagaa
ggtggcgtagttaaagggttgcaagaattgttagcctattatcaaaccattgaggtgcag
cgcgtgcgcttgccgtatgatattgatggcgtggtgtataaagtcaattccttggcacag
caggaacggttaggattcgtatcgcgcgcgccacgatttgcgctggcgcacaaatttccg
gcacaggaagcgatcacgcaactgtcgggtattgagattcaggttggaagaaccggcgcc
ttgacaccggttgcgcgcttaaaaccggtgtttgtcggtggcgtgaccgttacgaatgcc
actttacacaatgcggatgaaattgaacgcaaggatgtgcgcattggcgataccgttatc
gttcgccgtgcgggtgacgtgattccggaaatcgtatcggtaatactggaaaaacgtccg
gtagatacgcaggtttttgtgatgccggaacattgcccggtatgtggcgctaaggccgtg
cggcttgtggatgaggcggtatcacgttgtaccggtggattattttgcccggcgcagcgt
aaacaggcaattttgcattttgcttcacgtcgggcgatggatattgagggcttgggcgat
aagctggttgagcagatggtcgatcgggcaattatccgtaccccggcggatttgtataaa
ttgggattaggtgcgttggctgatctggaacgcatggcggagaaatcagccggtaatatt
ttgcgcgcgatagaaaaaagtaagcatacgacattagcaagatttatctatgcattgggg
attcgtaacgttggagaagccaccgcaaaggatttggcggcgcattgtggcagcctcgac
cgcttgattgaagccggtagtgagcgtttgcaacaaattccggatgtgggtccggtggtg
gcgcaaagcatcgcggatttctttgccgaagcccataatcgtgaagtgattgagcagctt
cgtgcctgtggagtgtactggaatgagcatgagggaatatccgttttagccggagaagca
agacccttgcagggcaagacgtttgttttaaccggaacgctaccgattatgagccgtgaa
gaagccaaagaaaagattgaattgctgggggggaaagtgagcggcagtgtttccaagaaa
acggattatgtcgtcgtgggtgcggatccgggcagcaaatacgacaaggcgctgagcttg
ggcattgctgtgcttgatgaagcgggattgctggaattactgcaagaacgctga
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integrated database retrieval system
