Niveibacterium microcysteis: JY500_11460
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Entry
JY500_11460 CDS
T07082
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
niv
Niveibacterium microcysteis
Pathway
niv03030
DNA replication
niv03410
Base excision repair
niv03420
Nucleotide excision repair
niv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
niv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JY500_11460 (ligA)
03410 Base excision repair
JY500_11460 (ligA)
03420 Nucleotide excision repair
JY500_11460 (ligA)
03430 Mismatch repair
JY500_11460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
niv03032
]
JY500_11460 (ligA)
03400 DNA repair and recombination proteins [BR:
niv03400
]
JY500_11460 (ligA)
Enzymes [BR:
niv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JY500_11460 (ligA)
DNA replication proteins [BR:
niv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JY500_11460 (ligA)
DNA repair and recombination proteins [BR:
niv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JY500_11460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JY500_11460 (ligA)
MMR (mismatch excision repair)
DNA ligase
JY500_11460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JY500_11460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QSI75146
LinkDB
All DBs
Position
complement(2537695..2539770)
Genome browser
AA seq
691 aa
AA seq
DB search
MIAPREAFEQAATLRATLERYSHAYYVLDEPLVPDAEYDRLFQALQALETEYPELCTADS
PTQRVGGKALAQFAPVRHAVPMLSIRTETDTEASGARAFDAQVRRELELTETDPPVEYAA
ELKFDGLAISLRYERGILVQAATRGDGETGEDVTQNIRAIRQIPLRLRTDTPPEVFEVRG
EVYMRRDDFARMNERQMARGEKTFVNPRNAAAGSVRQLDPAISAQRPLSFFAYGIGETTG
WGGADSHGALLDQLAQWGFPVCSERCVALGAEGLIAFHDRVGAQRDALPFDIDGVVYKVN
SLALQRRLGFRTREPRWAVAHKYPAQEVMTRVQGIEVQVGRTGKLTPVARLEPVFVGGVT
VTNVTLHNQDEVTRKGVRVGDSVVVRRAGDVIPEIVASLPERRPEGTTAFVMPQSCPVCG
SAVTREEGEADHRCSGGLYCPAQRKQALLHFASRRAMDIEGLGDKLVDQLVDAAIIRTPA
DVYKLGVLALANLDRMAEKSAQNLVDAIDRSRSTTLARFIYALGIRNVGEATAKDLARHF
GTLDALMAADETALLAVPDVGPIVAASIAGFFAEAHNREVVEQLRAAGVHWPESAGLADA
AATAPLSGKTFVLTGTLPTLSRDEATALIEAQGGKVAGSVSKKTSYVVAGSEAGSKLDKA
QQLGITILDEDALLALLRESSAGPQTMDQEQ
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgcctcgtgaggcgttcgagcaggccgccaccttgcgggcgacgctcgagcgc
tacagccatgcctattacgtcctggacgaacctcttgttccagacgcggagtacgaccgg
ttatttcaggcgctgcaagcgctcgaaaccgagtatccggaactttgcaccgccgattcg
ccgacccaacgggtcggcggcaaagctctcgcgcagttcgcgccggttcggcacgccgtg
ccgatgctctccatccgaaccgagaccgacaccgaggcgagcggcgctcgcgcattcgac
gcgcaagtgcgtcgtgagcttgagctgaccgaaaccgatccgccggttgaatatgccgcg
gagctgaagtttgacgggctcgcaatcagcttgcgctacgagcgcggtattctggtgcag
gcggcaacccgcggtgacggcgaaaccggcgaagacgtcacgcagaatatccgcgcgatc
cgccagataccgcttcgacttcgtaccgacaccccacctgaagtctttgaggtgcgcgga
gaggtctacatgcggcgcgacgattttgcgcgcatgaacgagcggcagatggcgcgtggt
gaaaagactttcgtcaatccgcgcaacgcggcggccggaagcgtgcgtcagctcgaccct
gcgatcagcgcgcagcgcccactgtccttctttgcctacggcatcggtgaaacgacgggt
tggggaggggcggacagtcacggtgcgctgctcgaccaactcgcgcaatggggcttcccg
gtctgcagcgagcgctgcgtggcactcggggcggaggggctgatcgcctttcatgatcgc
gtcggcgcgcagcgcgatgcactgccattcgacatcgatggtgtcgtctacaaggtcaat
tcgctggcgcttcaacgccggctcggcttccgtacccgtgagccacgctgggcggtcgcc
cacaagtacccggcacaggaagtcatgacgcgggttcagggaatcgaggtgcaggtcggc
cggacggggaaactgacgccggttgcgcgcttggagcctgtcttcgtcggaggtgtgacc
gtaacaaacgtgacgctgcataaccaagacgaggtcacgcgcaagggtgtgcgagtcggt
gacagcgtggttgttcggcgcgccggcgatgtgattcccgagatcgttgcttccttgccc
gagcgtcgtcccgaggggacgacagcctttgtaatgccccaaagctgccccgtgtgtggc
tctgccgtcacgcgggaagagggcgaggcggaccatcgttgcagtggcggtctttactgc
ccggctcagcgcaagcaggcactgctgcattttgcctcgcgtcgcgcgatggatatcgag
gggctcggcgacaagctggtggatcaactcgtcgatgcggcgatcattcgtacgccggcc
gatgtctacaaactgggcgtgcttgcgctcgccaacctcgaccggatggccgagaagtca
gcccagaatcttgtcgacgcgatcgatcgcagtcggagcaccaccctcgcgcgcttcatc
tacgccctgggcattcgcaacgtgggtgaagcgactgcgaaggatctcgcacggcacttc
ggcacccttgacgcgttgatggccgctgatgaaacggccctgcttgcggtgccggacgtc
gggccgatcgtggctgcaagcatcgcgggcttctttgcggaggcacacaaccgcgaggtg
gtcgaacagcttcgggcggcgggcgtgcactggccggaatcagcaggccttgccgatgct
gccgcaaccgcccccctgagcggcaagacattcgtgctgaccggcactctgccgacactg
tcgcgcgacgaagccaccgcgttgatcgaggcgcaaggcggcaaggtggcaggttcggtg
tcgaagaagaccagttacgtggtggccggctccgaggccggctccaagctcgacaaggcg
caacagttgggcattacgatcctcgacgaggatgcactcctcgcgctgctgcgtgaaagc
agtgctgggccccaaacaatggatcaagaacaatga
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