Nitratireductor mangrovi: FQ775_02320
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Entry
FQ775_02320 CDS
T06518
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
niy
Nitratireductor mangrovi
Pathway
niy03030
DNA replication
niy03410
Base excision repair
niy03420
Nucleotide excision repair
niy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
niy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FQ775_02320 (ligA)
03410 Base excision repair
FQ775_02320 (ligA)
03420 Nucleotide excision repair
FQ775_02320 (ligA)
03430 Mismatch repair
FQ775_02320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
niy03032
]
FQ775_02320 (ligA)
03400 DNA repair and recombination proteins [BR:
niy03400
]
FQ775_02320 (ligA)
Enzymes [BR:
niy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FQ775_02320 (ligA)
DNA replication proteins [BR:
niy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FQ775_02320 (ligA)
DNA repair and recombination proteins [BR:
niy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FQ775_02320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FQ775_02320 (ligA)
MMR (mismatch excision repair)
DNA ligase
FQ775_02320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FQ775_02320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
DUF5315
Ribosomal_L9_C
Motif
Other DBs
NCBI-ProteinID:
QDY99297
UniProt:
A0A5B8KUS1
LinkDB
All DBs
Position
complement(2045395..2047509)
Genome browser
AA seq
704 aa
AA seq
DB search
MPKSSKPVSDLSEKEAVAELERLASEIAEHDRRYHAEDAPTISDAEYDALRRRNLAIEQR
FPHLVRADSPSLNVGAAVSEKFEKVRHKVPMLSLDNAFSNDDVRDFVERVRRYLRLAPET
ELGLTAEPKIDGLSLSLRYEKGRLTAAATRGDGQTGEDVTANARTIADIPNVLSGDAPDV
LEVRGEVYMTQADFLALNRRQEAEGKQTYVNPRNTAAGSIRQLDSSVTASRALHFFAYTW
GEVSAMPAETQMGMVAAFERYGFPVNPLMKRFTDVEGLLAHYRLIEESRAGLGYDIDGVV
YKVDDLAMQERLGFVSRSPRWAIAHKFPAEKATTVLNGIDIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNAEEIERLGVMIGDTVTVQRAGDVIPQILGVDLDKRPAGAVAFEFPSTC
PCELATPVVREETAGGAEGVIRRCTGEFACPFQRIEHLRHFVSRRAFDIEGLGEKQIEFF
FGDDDLPVKSPADIFTLGERDATNLKKLKDKEGFGAVSAAKLFAAIEERRDISLERMIYA
LGIRHVGETTARTLARAYGSWQAFHDAAIAVANGDENAREDMDALDDIGNAVIDAIARYF
GEEHNRALVERLAAQVRVEDAEKVASDSPVAGKTIVFTGALERMSRDEAKAMAEKLGAKA
AGSVSSKTDLVVAGPGAGSKLKKAAELDIEVIDEATWFERIGQG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatcctccaaacccgtcagcgacctttcggaaaaggaagccgtcgccgaactt
gagcggctcgcgagcgagatcgccgagcacgaccggcgttatcacgccgaggacgccccg
acgatcagcgacgcggaatacgatgcgctgaggcgccgcaacctggcgatcgaacagcgc
tttccgcacctggtgcgtgctgactcgccatcgctgaacgtcggcgcggcggtgtcggaa
aagttcgagaaggttcggcacaaggtgccgatgctttcgctcgacaacgcgttttcgaac
gacgacgtgcgcgacttcgtcgagcgggtcaggcgttatctgaggctcgcgcccgagacg
gaattgggcctcaccgccgaaccgaagatcgacgggctgtcgctgtcgctgcgctacgag
aagggaaggctgacggcggcggcgacgcgcggcgacggccagaccggcgaggatgtcacc
gccaacgcccggaccatcgcagatattcccaacgtgctttccggcgatgctccggacgtg
ctggaggtgcgcggcgaggtctacatgacccaggccgacttcctggcgctcaaccgacgc
caggaagccgagggcaagcagacctatgtcaatccgcgcaacaccgcggccggctcgatc
cggcaactcgactcttcggtcaccgcgtcacgcgcgctgcatttcttcgcctatacctgg
ggcgaggtaagcgccatgccggccgaaacccagatgggcatggtggcagccttcgagcgc
tacggctttccggtcaacccgttgatgaagcgcttcaccgatgtcgagggtctgctcgca
cactaccggctgatcgaggaaagccgtgccggactcggctacgacatcgatggcgtcgtc
tacaaggtcgatgacctcgccatgcaggagcggctcggcttcgtgtcgcgctcgccgcgc
tgggccattgcccacaaatttccggccgagaaggcgaccacggttctcaacggcatcgat
atccaggttggccgcacaggagcgctgacgccggtggcgcgactgacgccggtgaccgtg
ggcggcgtcgtggtgaccaacgcgactttgcacaatgccgaggagatcgagcgtctcggc
gtcatgatcggcgacacggtcaccgtgcagcgtgccggcgacgtcatcccgcagatcctc
ggtgtcgatctcgacaaacggcccgcaggtgccgtcgcgttcgaatttccctccacctgc
ccatgcgagcttgcgacgccggtcgtgcgggaggagacggcgggtggtgcggagggcgtg
atcaggcgctgcacgggcgagtttgcctgtccgttccagcgcatcgagcatctgcgccac
ttcgtgtcgcgccgcgccttcgacatcgaggggctgggcgaaaaacagatcgaattcttt
tttggcgacgacgatctgccggtgaaaagcccggcggacatctttacgcttggcgagcgc
gacgcaacgaatctgaagaagctgaaggacaaggaagggttcggcgcggtctcggcggcg
aagcttttcgcggcgatcgaggaacggcgggacatctcactggagcgcatgatctatgcg
ctcggcatccgtcatgtcggcgagacgacggcccgcaccctggcccgcgcctacggctca
tggcaggcgtttcatgacgcggccattgccgttgccaacggcgacgagaacgcgcgtgag
gacatggacgcgctcgacgatatcggcaacgcggtgatcgacgcgatcgcgcgctatttc
ggcgaggagcataatcgcgcgttggtcgaaaggcttgcggcgcaggtgcgggtcgaggat
gccgagaaggttgcctccgattctcctgtcgccggcaagacgattgtcttcaccggcgcg
ctggaacgcatgtcgcgcgacgaggccaaggcgatggccgagaagctcggcgccaaggcc
gccggatcagtgtcgagcaagaccgacctcgtggttgcggggccgggcgcgggctcgaag
ctgaaaaaggcggccgaactcgacatcgaggtgatcgacgaggcgacctggttcgaacgg
atcgggcaggggtga
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