Candidatus Nitrospira kreftii: Nkreftii_000732
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Entry
Nkreftii_000732 CDS
T08052
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nkf
Candidatus Nitrospira kreftii
Pathway
nkf03030
DNA replication
nkf03410
Base excision repair
nkf03420
Nucleotide excision repair
nkf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nkreftii_000732
03410 Base excision repair
Nkreftii_000732
03420 Nucleotide excision repair
Nkreftii_000732
03430 Mismatch repair
Nkreftii_000732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nkf03032
]
Nkreftii_000732
03400 DNA repair and recombination proteins [BR:
nkf03400
]
Nkreftii_000732
Enzymes [BR:
nkf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Nkreftii_000732
DNA replication proteins [BR:
nkf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Nkreftii_000732
DNA repair and recombination proteins [BR:
nkf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Nkreftii_000732
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nkreftii_000732
MMR (mismatch excision repair)
DNA ligase
Nkreftii_000732
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nkreftii_000732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
GFRP
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
QPD02958
UniProt:
A0A7S8IY70
LinkDB
All DBs
Position
complement(680651..682711)
Genome browser
AA seq
686 aa
AA seq
DB search
MPQDSLYPDSASHAEISTADRDRLAQLKTQIRHHDYLYYVKDQPEISDGEYDRLFRELVE
FEQIHPELITPDSPTQRVGAPPLDELGKVRHEQPMLSLDSLVDPSEVLLFDQRMKRELAT
DVIEYTVEPKFDGLSVELVYDHGRFVRGSTRGDGSLGEDITVNLRTIRSLPLQLQDLTCP
DQLAVRGEVYMRLGDFHALNRRMTERGLDAFANPRNAAAGSLRQLDSQITASRPLVVTCY
EVMATTGPRPESHWAELEALARWGLPVPTLRQRCDDIEQVLEFHRQTERQRENLAYEIDG
VVVKVNRGAWQARLGMKSRSPRWAIAFKFPPRKEITEVQDIAISVGRTGTLTPLALLKPV
EVGGVTISRATLHNADEVARKDIRIGDTVRVERAGDVIPAIAERIPLPNQIRSDPFQMPS
SCPICGSAVARDGAYYYCTGQASCPAQLKGAIEHFASKAALNIEGLGKKTVAQLVDRGLV
KDLSDLYRLDREQLLRLEGFAERSTTLLLDAIAQSKTMPLDRFLIGLGIRQVGQHIAKVL
AREFGSLDAIMSADRDRLQTIREIGPEISESLFSYFQESSNRRVIDQLKNLGLSIMPSRV
LQNATDLSFSGRSFVFTGSLTGMTREEAAALVEQLGGTVSSSVSRKTTYVVAGDEPGSKL
DQAMKFGVRVLNENEFQRLLNRPEKT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgccacaggattcactttaccccgactcagcgtcccatgcggagatttcgaccgccgac
cgcgaccgactcgctcaactcaagacccaaatcaggcatcatgactacctgtactatgtc
aaggaccagccggagatttccgatggtgaatacgatcggctgttccgtgaactggttgaa
ttcgagcagatacaccccgaactgatcacgcctgattcccccacacagcgtgtgggtgcg
cctcccttggacgaacttgggaaggttcggcatgaacagccgatgttgagcctcgattcc
ctcgtcgatcccagtgaggtcctgctatttgatcagcgcatgaaacgggagcttgcaacg
gacgtaatcgagtatacggtcgaaccaaaatttgacggcctctcggttgagctcgtctat
gatcatgggaggtttgttcgtggttcgacccgtggtgatggcagtcttggtgaggatatc
accgtcaatctccggacgatccgttcattgcctctccagttgcaggatctgacttgtcct
gatcagctggccgtgcgtggcgaagtctatatgcgtctcggcgactttcacgcactgaat
cgacgcatgacggaacggggactggacgcgttcgctaatccgcgcaatgccgctgccggc
tcccttcggcagctcgactcccagattaccgcttctcgtccgctcgttgtcacgtgttat
gaagtgatggcgacgacgggcccccgtccggaatcccactgggctgaactcgaggccttg
gctcggtggggccttcctgtccccacgctccgacagcgatgcgacgacatcgaacaggtc
ttggagtttcaccgacagacggagcggcagcgagagaaccttgcctacgaaattgacggc
gtggtggtaaaggtcaaccgtggagcctggcaagcccgcttggggatgaaatcccgaagc
ccccgctgggccatcgcgttcaagtttcccccgcgaaaagaaatcaccgaggtgcaggac
attgccatatccgtgggtcgaaccgggaccttgacccccctcgctctcttgaagccggtg
gaagtcggtggcgtgaccattagccgcgcgactctccacaacgccgatgaagtggcaagg
aaagatatccggatcggcgacaccgtgcgagtggagcgcgccggggatgtgatcccggcg
atcgccgaacggataccgctccctaatcaaattaggtccgacccttttcagatgccgagt
tcctgtccgatttgtggctccgccgtcgcgagagatggtgcctattattactgtacgggt
caggcctcctgcccagctcaactaaagggcgcgatcgaacattttgcttcaaaggcagcg
ctcaatatcgaaggcctcggcaaaaagactgtcgctcaattggtggatcgaggactcgtg
aaggatctgtccgatctctatcgactcgatcgggagcagctcttacggctcgaaggattt
gcggaacgatccacaaccttgctgctggacgccatcgcacaaagcaagacgatgcctctc
gaccgttttttgattgggcttggaatccgtcaagttggacaacatattgccaaggtgctc
gcgcgtgagtttggctcgcttgatgcgatcatgtcggccgaccgcgatcggcttcagacg
atcagagagatcggaccggaaatctcggaaagtttgttctcctacttccaagaaagttct
aacaggcgagtcatcgaccaattgaagaacctaggcctttcgattatgccttctcgcgta
cttcagaacgcaacagatctctctttctcaggaaggagcttcgtcttcactggaagtttg
acagggatgacaagggaagaggctgcagcactggtcgagcagcttggcggtacagtctca
tcttccgtcagcagaaaaacgacctacgtagtggcgggggatgaacccggatccaaactc
gatcaggcaatgaaattcggagtacgagtcctcaatgaaaacgaatttcaacgcttgttg
aatcggccagagaaaacatag
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