Niastella koreensis: Niako_6046
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Entry
Niako_6046 CDS
T01679
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nko
Niastella koreensis
Pathway
nko03030
DNA replication
nko03410
Base excision repair
nko03420
Nucleotide excision repair
nko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Niako_6046
03410 Base excision repair
Niako_6046
03420 Nucleotide excision repair
Niako_6046
03430 Mismatch repair
Niako_6046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nko03032
]
Niako_6046
03400 DNA repair and recombination proteins [BR:
nko03400
]
Niako_6046
Enzymes [BR:
nko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Niako_6046
DNA replication proteins [BR:
nko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Niako_6046
DNA repair and recombination proteins [BR:
nko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Niako_6046
NER (nucleotide excision repair)
GGR (global genome repair) factors
Niako_6046
MMR (mismatch excision repair)
DNA ligase
Niako_6046
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Niako_6046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
DZR_2
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AEW02271
UniProt:
G8T7L6
LinkDB
All DBs
Position
7506376..7508475
Genome browser
AA seq
699 aa
AA seq
DB search
MYSPDQTKALQKLTTGLMEKNSQGHITDKDIETLRDVLRFHEHRYYILNDPLIADFEYDQ
LYKALEKLEKENPSLRTPDSPTQRVAKELTKEFPTVSHLVPMLSLDNSYNADDLIDFDRR
ARELAKVDVLEYCVEPKFDGASISLIFENDMLTRGATRGNGVQGDDITTNIKQIRSIPLS
AAISKYGLEQIEIRGEVLMSKQNFKKYNDALAEQNLPPLANPRNAAAGTLRIKDPKEVSK
RNLEAFLYQISHYTQLPGKEVDPIVNSHSGCLTMLWELGFRSPVKEKKVLKGIDAVVAYC
HEFEQQRDDLPYEIDGMVIKVNDIHQQELLGMTTHHPRWAIAYKFKARQATSKLRAVEFQ
VGRTGSVTPVAKIDPVPIGGVTVGSISLFNEEVIKDKDLMIGDTVLVERAGDVIPYIVKS
LPELRNGTEQKIVFPTHCPVCGDKLEKPEEEAVWRCSNINCEAQVVERIIHFTAKDAMDI
RGLGEANIRKFFSLGFLKDVPGIYELPFDKIGTLEGFGKKSITNLQTAIETSKAQPLHRL
IFGLGIRYVGETTAKTLAHAVKHLLDLKDYTLEELQNLEDVGPKVAGSVHQFFQNLDNIA
TLQKLEQLGLRLKNDKKDLVTGGNLSGQTFLFTGTLPTLKRSDAEAMVESNGGKLLSSVS
ANLTYLVAGEEAGSKLEKAKKITSIKIITEAEFLSLIHH
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtattctcccgaccaaacaaaagctttgcagaagctgactaccggtttaatggaaaag
aactcgcaaggtcatataaccgacaaggacattgagaccctgcgggatgtattgcgtttt
catgaacatcggtattatatcctgaatgatccgttgattgccgactttgaatacgaccaa
ctatataaggcactcgaaaagttggaaaaggagaacccttctttacgcacccccgattcg
ccaacccagcgggtagccaaagagcttaccaaagaatttccaacggtatcgcacctggta
cctatgttatcgctcgataattcctataatgccgatgatcttattgacttcgatcgccgg
gcaagggaactggccaaagtagatgtgctggagtattgtgttgaacccaagttcgacggg
gccagtatttccctcatctttgaaaacgacatgctgacgcgtggtgccacccggggtaac
ggcgtacagggcgatgatattactaccaatataaaacagatcaggtctattcctttatcg
gcagccatctcaaagtatggtcttgaacagatagagatcaggggagaagtgttaatgagc
aagcaaaacttcaagaagtataacgatgcgctggccgaacaaaacctgccgccactggcc
aacccacgcaatgcagcagccggcactttgcgcataaaagacccaaaggaagtgagtaag
cgaaacctggaagcctttttataccagatcagccattatacccagttacccggcaaagaa
gtggaccctatcgtgaacagccacagcggttgtttgactatgttatgggagcttggcttc
cgcagccccgtaaaggaaaagaaagtgctgaagggcatagacgctgttgttgcctattgt
catgaatttgaacaacaacgcgacgatctgccttatgagatagacggtatggtgataaaa
gtgaacgatatacatcagcaggagctgctgggcatgaccacccatcatccccgttgggcc
attgcttataaattcaaggcacggcaggctaccagtaagttaagggcagttgaattccag
gttggccgaaccggttcggttacacctgttgccaagatcgatcctgtacctattggtggg
gttacagtgggttctatatcattatttaacgaagaggtgatcaaagacaaggacctgatg
ataggcgacactgtgctggttgaacgggctggtgatgttatcccctatattgtgaaatct
ctccccgaacttaggaatggtacagaacaaaagatcgtttttcctacccattgcccggta
tgtggcgataagcttgaaaagcccgaagaagaggctgtttggcgttgcagcaacatcaac
tgtgaagcccaggtggtggaacgcatcattcactttaccgccaaggacgctatggacatc
aggggacttggcgaagcaaacattcgtaagttcttctcgttgggttttcttaaagatgta
ccaggcatatacgagctgccatttgataagatagggacgttagaagggtttggcaagaaa
agtattaccaacctgcaaactgccatcgaaacatccaaagcccagcccttacaccggctt
atctttggcctgggtatccgttatgtaggagaaacaaccgcaaaaacgcttgcccatgca
gttaagcatttgttggacttaaaggattataccctcgaagaacttcagaaccttgaggat
gtagggcccaaagtggctggcagcgtacatcagtttttccaaaatctggacaacatagca
accctgcaaaagcttgaacagctgggcctgaggctgaaaaatgacaaaaaggacctggta
acaggaggcaacctgagcggtcaaacgtttttatttacgggcaccttgcccacgctcaag
cgaagtgatgccgaagccatggttgaatctaacggaggcaagctcctgagcagtgttagc
gccaatttaacctatctggtagcgggagaagaggcgggaagtaagctcgaaaaagccaaa
aagataacctcaatcaagattataaccgaagccgaattcctgtcccttatacatcattga
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