Candidatus Nitronauta litoralis: G3M70_12775
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Entry
G3M70_12775 CDS
T07016
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nli
Candidatus Nitronauta litoralis
Pathway
nli03030
DNA replication
nli03410
Base excision repair
nli03420
Nucleotide excision repair
nli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3M70_12775 (ligA)
03410 Base excision repair
G3M70_12775 (ligA)
03420 Nucleotide excision repair
G3M70_12775 (ligA)
03430 Mismatch repair
G3M70_12775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nli03032
]
G3M70_12775 (ligA)
03400 DNA repair and recombination proteins [BR:
nli03400
]
G3M70_12775 (ligA)
Enzymes [BR:
nli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3M70_12775 (ligA)
DNA replication proteins [BR:
nli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3M70_12775 (ligA)
DNA repair and recombination proteins [BR:
nli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3M70_12775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3M70_12775 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3M70_12775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3M70_12775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QPJ62702
UniProt:
A0A7T0BX98
LinkDB
All DBs
Position
2805329..2807323
Genome browser
AA seq
664 aa
AA seq
DB search
MDDADLKEIERLSDLIRHHEHLYYTMDQPEITDREYDRLLENLKELETRHPQWVFKDSPT
QRVGGKASDKFPPITHLQAMLSLDNTYNIEELKAFHKRVLKGLKVDEVEYVAEPKIDGLG
VTLVYEDGKFVRGATRGDGKVGEDITANLKTIRSIPLRLNSKENSKGIFEARGEVYMERE
AFKNFNAEREKNGDPPFANPRNAAAGTVRLLDPSITAKRPLDIWVYSLGHCDAPLPGTQY
ESLEFLRKLGFRVNPDTRLCQTFDEALEQVSVWEKKRTRLAYEVDGLVFKLNSIKDQARL
GRTVKHPRWAVAFKFEAEQAETRILDIVVQVGRTGAITPVAELEPVFLSGSTVKRATLHN
EDEITRLDVRVGDRVLIEKAGEIIPKVIEVLDKDKKRKNPVFEMPSLCPECNTELRREEG
EVVLRCENLKCPGQLKERLLHFGSRNAMDIDHLGEAVVAQLIAQCGVKQFSDLYRLNLEQ
VRNLDRLGEKSGENLLAAIEKSKGAGLSRFIFGLGIRHVGQRVAQVLATTFGSIEKLANI
SPEELEAVEEIGPKIARSLAEFFQDEDNRKEIERLKKSGVKMEEETQSHEGRLSGKQLVL
TGTLKTMTREEAKQKIQHAGGRVTSSVSGKTDFVVAGSDPGSKAQKAAKLGVLVIGEDEL
KTLL
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgccgacttaaaggagatcgaacggttaagcgatctgattcgccatcacgaa
cacctttactatacgatggatcagccggaaatcactgaccgcgagtacgatcgccttctt
gaaaacctgaaggaacttgaaacccgccacccgcaatgggtttttaaggattcgccgacc
caacgcgtcggcggtaaggcatcggataaattccctccaatcacccatctccaggcaatg
ttaagtctggacaacacctacaacattgaagagttgaaggcatttcacaagcgggtgctc
aaggggttgaaagtcgatgaggtggaatatgttgcggaacctaaaatcgatggcctgggt
gtgacccttgtttatgaagatgggaagtttgttcgtggggctacccggggagatggcaaa
gttggcgaagacatcaccgccaacttaaaaacgattcgttcgattcctcttcgtttaaat
tcaaaagaaaactctaagggaatatttgaagcacgcggcgaggtttatatggagcgtgaa
gcgtttaaaaatttcaatgccgaacgggagaaaaacggagatcctccatttgccaatccg
cgaaatgccgcagccggtacggtccgtcttttagacccatcaatcacggcgaagcgtcca
ctcgatatctgggtctatagtctggggcactgcgatgctcccttgcctggaacccagtat
gagtctctggagtttttgcgaaaactgggtttcagggtcaatcccgatacgcgcttgtgc
cagacttttgatgaagcgctggagcaggtctctgtatgggaaaagaaaaggaccaggctg
gcttatgaggtcgatggtttggtttttaaattgaattcaattaaggatcaggcgcggtta
gggcgaactgtcaagcatcctcgttgggctgtggccttcaagtttgaagcggaacaggca
gaaacgcgtattctcgatatcgtggtccaggttggacgcacaggggctataacgccagtt
gcagaactggaaccggtctttttatctggcagtaccgtgaaacgagcgacattacataac
gaggatgagattacgcgattggatgtgagagtcggtgaccgggtcctgatagaaaaagcc
ggtgagattattccgaaagtcattgaggttttggataaggataagaagcgcaaaaacccc
gtttttgaaatgccatcgctttgcccggagtgtaatacggaactcagaagggaagaggga
gaagtggttctccgctgcgagaatttaaaatgtcccggacagctcaaagaacgcctgctt
cattttggttcccgcaatgccatggacattgatcaccttggggaagcggtcgtggcacaa
ctgatagcacaatgtggggtgaaacagttttccgatctttatcgtttgaatctggaacag
gtcaggaatcttgatcggctgggggaaaagtccggagaaaacctgctggctgcgattgag
aaaagtaaaggagcaggtttatcccgttttatcttcggacttggtatccggcatgtcggg
cagcgtgtcgcccaggtgctggcaaccacttttggttcgatagagaaacttgcgaatatt
tctccagaagagttggaagctgttgaagaaattggacccaaaattgcccgaagcctggcg
gaattttttcaggatgaggacaatcgcaaggaaattgaacggctgaaaaaatcaggggtg
aagatggaagaagagactcagagtcacgaaggccgcttgtcggggaaacaacttgtgctg
acgggtactctgaaaaccatgacccgtgaagaggccaaacagaaaatccagcatgcaggc
ggtagagtcacctcttctgtgtcgggtaaaacagactttgttgtggcgggatcagaccct
ggatcgaaagcacaaaaggcggcaaaactgggggtgcttgtaattggagaagatgaactt
aagacactattgtaa
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integrated database retrieval system
