Neisseria lisongii: PJU73_02090
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Entry
PJU73_02090 CDS
T09339
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nls
Neisseria lisongii
Pathway
nls03030
DNA replication
nls03410
Base excision repair
nls03420
Nucleotide excision repair
nls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PJU73_02090 (ligA)
03410 Base excision repair
PJU73_02090 (ligA)
03420 Nucleotide excision repair
PJU73_02090 (ligA)
03430 Mismatch repair
PJU73_02090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nls03032
]
PJU73_02090 (ligA)
03400 DNA repair and recombination proteins [BR:
nls03400
]
PJU73_02090 (ligA)
Enzymes [BR:
nls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PJU73_02090 (ligA)
DNA replication proteins [BR:
nls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PJU73_02090 (ligA)
DNA repair and recombination proteins [BR:
nls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PJU73_02090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PJU73_02090 (ligA)
MMR (mismatch excision repair)
DNA ligase
PJU73_02090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PJU73_02090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WCL71936
LinkDB
All DBs
Position
complement(465687..468125)
Genome browser
AA seq
812 aa
AA seq
DB search
MKQRIDELTAQLNRYAYEYYTLDAPSVPDAEYDRLFRELEALEAAYPEYRLPDSPTQRVG
GEPLPEFQSVRHRIPMLSLSNAFSPQNEDGVFDHSEMLAFDERVRNGLGGETPEYVIEPK
FDGLAISLTYENGLLVQAATRGDGVSGEDVTRNVKTIANIPLRLHGGDVPEFLEVRGEVL
MLKADFIRLNEFQTVNNQKLFANPRNAAAGSLRQLDSKITAKRRLHFFAYSIAEQQGGKT
LHTHFDELVLLKTLGFSLPDGNYNVFPNIGSVLAFYEAMQHKRPSLLYEIDGMVIKVNSL
AQQETLGFISRAPRWAVAHKFPAEEALTQVEAIDVQVGRTGAVTPVARLKPVFVGGVTVT
NVTLHNEGEAQRKDVRVGDTVVVRRAGDVIPEIVRVVFERRPMKHAATQSNPQGDLFGAI
TEARPSENQVPLHPQYRLPDTCPICSSDIEKEEGEAVARCSGGMLCAAQRAQSLIHFASR
KAMDIDGLGDKQIEALVAQNLVQHFADLYRLDIPTLQKMKENAESSETMPSENPATALSD
EAPTGKTAKKQPVKWAQNILEGIENSRRPELARFLFALGIRHVGERTAKSLAQAFGSLET
VRLAPEPLLACLPDIGNIVARSIAHFFAQSEQQRQIDELLAAGVTPQTQAITLPLARYAA
PEKWLARLPGFKISETKATALWELSGQSVSGLLTDKALPAEWQNWRNQAENHRLLQNIEQ
FLAAMPSENDSGNTAAESPAAGKTFVLTGTLPTLKRDQAQAMIEAAGGKVSGSVSKKTDF
LVAGEAAGSKLEKANALGITVLDENALLALLG
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacgcattgacgaacttaccgcccagctcaaccgctacgcctacgaatattac
acattagacgcacccagcgttcccgatgccgaatacgaccgactgtttcgcgaactggaa
gccttggaagccgcctatcccgaataccgtttgcccgacagcccgacccagcgtgtcggc
ggcgaacccttgcccgaatttcaaagcgtgcgccaccgcattcccatgctctcattgagc
aatgccttttcgccgcaaaacgaagacggcgtattcgaccacagcgaaatgctggcattt
gacgaacgtgtgcgcaacggcttgggcggagaaacacccgaatatgttatcgaaccgaaa
ttcgacggcttggcaatcagcctgacttacgaaaacggcctgctggtgcaggcagccaca
cggggcgacggcgtatcgggcgaagacgttacccgcaacgtgaaaaccattgccaatatt
ccgctgcggctgcacggcggcgatgttcccgaatttttggaagttcggggcgaagtattg
atgctgaaagccgattttatccgcctcaacgaatttcagacggtcaacaatcaaaaactg
tttgccaatccccgcaacgccgccgccggcagcctgcgccagctcgattccaaaatcacc
gccaaacgccgtctgcactttttcgcctattccattgccgaacaacaaggcggcaaaacg
ctgcatacccattttgacgaactggtattgctcaaaacactgggcttcagtttgcccgac
ggcaattacaacgtcttccccaacatcggcagcgtgttggcattttacgaagccatgcag
cacaaacgcccgtcgctcctctacgaaatcgacggcatggtgattaaagtcaacagcttg
gcgcaacaggaaaccttgggctttatctcccgtgcgccgcgctgggcagtggcacacaaa
tttccggcagaagaagcattgacccaagtcgaagcgattgacgtacaagtcggccgcacc
ggtgccgttactcccgtggcacgcctgaaaccggtatttgtcggcggcgtaaccgttacc
aacgttaccctgcacaacgaaggcgaagcccagcgcaaagacgttcgggtcggcgacacc
gtcgtcgtgcgccgtgccggcgacgtgattcccgaaatcgtgcgggttgtcttcgaacgc
cgcccgatgaaacacgccgcaacccaatccaacccgcaaggcgacttgttcggagcaatt
acggaagcaaggccgtctgaaaatcaagtgccgctacacccgcaataccgcttgcccgat
acttgcccgatttgcagcagcgacatcgaaaaagaagaaggcgaagccgtagcccgctgc
agcggcggcatgctctgcgccgcccagcgtgcgcagtcgctgattcatttcgcctcacgc
aaagcaatggacatcgacggcttgggcgacaaacaaatcgaagccttggtcgcccaaaat
ctggtgcagcatttcgccgacctctaccgcctcgacattcccaccctgcaaaaaatgaaa
gaaaacgccgaaagcagcgaaaccatgccgtctgaaaaccccgccacagccttatcagac
gaagcaccaaccggcaaaaccgccaaaaaacagcccgtcaaatgggcgcagaatattctg
gagggcatcgaaaacagccgccgccccgaattggcacgtttcctgtttgcactcggcatc
cgccacgtcggcgaacgcaccgccaaatcactggcacaagccttcggcagcctcgaaacc
gtccgcctcgcccccgagccgctgctcgcctgtctccccgacatcggcaacatcgtcgcc
cgttccatcgcccactttttcgcccaaagcgaacagcaacgccaaatcgacgaactgctc
gccgcaggcgttaccccgcaaacccaagccattaccctaccgcttgcccgctacgccgcc
cccgaaaaatggctcgcccgcctacccggtttcaaaatcagcgaaaccaaagccaccgcc
ctgtgggaactttccggccaatccgtcagcggccttttgaccgacaaagccctacccgcc
gaatggcaaaactggcgcaaccaagccgaaaaccaccgtttgctgcaaaacatcgaacaa
ttcctcgccgccatgccgtctgaaaacgacagcggcaacaccgccgccgaatcccccgcc
gcaggcaaaaccttcgtcctcaccggcaccctcccgaccctcaaacgggatcaggcacaa
gccatgatcgaagccgccggcggcaaagtctccggcagcgtctccaaaaaaactgacttc
ctcgtcgccggcgaagccgcaggcagcaaactcgaaaaagccaacgccctaggcattacc
gtgttggacgaaaacgctttattagccctgctgggctaa
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