Nocardioides marmotae: HPC71_06585
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Entry
HPC71_06585 CDS
T09088
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03030
DNA replication
nmar03410
Base excision repair
nmar03420
Nucleotide excision repair
nmar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPC71_06585 (ligA)
03410 Base excision repair
HPC71_06585 (ligA)
03420 Nucleotide excision repair
HPC71_06585 (ligA)
03430 Mismatch repair
HPC71_06585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmar03032
]
HPC71_06585 (ligA)
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_06585 (ligA)
Enzymes [BR:
nmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPC71_06585 (ligA)
DNA replication proteins [BR:
nmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPC71_06585 (ligA)
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPC71_06585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPC71_06585 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPC71_06585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPC71_06585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
BRCT_2
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QKE00777
LinkDB
All DBs
Position
1368808..1370961
Genome browser
AA seq
717 aa
AA seq
DB search
MTDPTPATEDAREEHRRLAEEVEDARWRYYVLDSPTLSDADFDARMRRLEELEEQYAELR
TPDSPTQKVGGAVSTDFTAVDHLQRMESLDNAFSFEELEAWHTRLRRDGVDDPALLCELK
VDGLAINLLYEDGRLVRALTRGDGRTGEDVTPNVRTIDSVPDRLTGTEEHPVPRLVEVRG
EVFLPVEAFERLNEAMTEAGKPVFANPRNAAAGSLRQKDPRVTATRALGMVCHGVGKREG
FEPRAQSAAYDALRAWGLPTSDRVRVVDSLAEAREFIEHYGEHRHDVEHEIDGVVLKVDD
VGLQRRLGSTSRAPRWAIAFKYPPEEVNTRLLEIRVNVGRTGRVTPYGVMEPTKVAGSTV
ENATLHNYHEVERKDVRPGDTVILRKAGDVIPEILGPVLDLRPEGLAPWVGPTACPACGT
TLVEQKEGDKDRRCPNHQFCPAQARERVFHVAGRGAFDIEGLGYEAATALLDAGVIGNEG
DVFDLTAESLLRAPLFTRAPKKGEGDHPVLSANGQRLLANLAERKQVPLWRVLVALSIRH
VGPTAARALAQEFGSMERIRAASEAELAAAEGVGPTIAEAVIEWFTVDWHAEIVEKWTAA
GVSMADERDESTPRTLEGLTVVVTGSLAGFSRDEAKEAILARGGKASGSVSKKTDFVVVG
ESAGSKADKAEQLGLPILDEDGFVLLLDAGPDAVRPPEGGDDAGADEGAGEEAGELD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgacccccgcgaccgaggacgcccgcgaggagcaccgacggctggccgag
gaggtcgaggacgcgcgctggcgctactacgtcctggactcaccgaccctgtccgacgcc
gacttcgacgcgaggatgcggcggctggaggagctggaggagcagtacgccgagctgcgc
acccccgacagcccgacgcagaaggtgggcggggcggtctccaccgacttcaccgccgtg
gaccacctgcagcggatggagagcctcgacaacgccttctccttcgaggagctcgaggcc
tggcacacccgcctgcgccgcgacggcgtggacgacccggcgctgctgtgcgagctcaag
gtcgacgggctggccatcaacctgctctacgaggacggccggctggtgcgtgccctcacc
cgcggcgacggccgcaccggcgaggacgtcacgcccaacgtgcgcaccatcgactccgtc
cccgaccggctcaccggcaccgaggagcaccccgtgccgcggctggtggaggtccgcggc
gaggtgttcctgcccgtcgaggcgttcgagcggctcaacgaggcgatgaccgaggccggc
aagccggtcttcgccaacccgcgcaacgccgcggccgggtcgctgcggcagaaggacccc
cgcgtcaccgccacccgcgcgctgggcatggtctgccacggcgtcggcaagcgcgagggc
ttcgagccgcgcgcccagtccgcggcgtacgacgcgttgcgggcgtggggcctgccgacc
tccgaccgggtgcgggtggtggactccctggccgaggcccgcgagttcatcgagcactac
ggcgagcaccgccacgacgtcgagcacgagatcgacggcgtggtgctcaaggtcgacgac
gtcgggctccagcgccggctcggctcgaccagccgcgccccgcggtgggcgatcgcgttc
aagtacccgcccgaggaggtcaacacccggctcctggagatccgcgtgaacgtcgggcgc
accggccgggtcacgccgtacggcgtcatggagccgaccaaggtcgccggctccacggtg
gagaacgcgacgctgcacaactaccacgaggtcgagcgcaaggacgtccggccgggcgac
accgtgatcctgcgcaaggccggggacgtgatccccgagatcctcgggccggtgctggac
ctgcgccccgagggcctcgccccgtgggtcggcccgaccgcgtgccccgcctgcggcacc
acgctggtcgagcagaaggagggcgacaaggaccggcgctgccccaaccaccagttctgc
cccgcccaggcgcgcgagcgggtcttccacgtcgccggccgcggcgccttcgacatcgag
gggctcggctacgaggccgcgacggccctgctcgatgcgggggtcatcggcaacgaggga
gacgtcttcgacctcaccgcggagtccctgctgcgcgcgccgctgttcacccgcgcgccg
aagaagggcgagggcgaccacccggtgctcagcgccaacggccagcggttgctggccaac
ctcgccgagcgcaagcaggtgccgctgtggcgggtgctcgtcgcgctctcgatccgccac
gtcggcccgaccgccgcgcgggcgctggcccaggaattcggctcgatggagcggatccgc
gcggccagcgaggccgagctggccgcggccgagggcgtcgggccgaccatcgccgaggcg
gtgatcgagtggttcaccgttgactggcacgccgagatcgtggagaagtggaccgccgcc
ggggtctccatggccgacgagcgcgacgagtccacgccgcggacgctggaggggctcacc
gtggtggtgaccggctcgctcgccggcttcagccgcgacgaggccaaggaggcgatcctc
gcccgcggcggcaaggcctcgggctcggtgtcgaagaagaccgacttcgtcgtcgtcggc
gagagcgccgggtccaaggccgacaaggccgagcagctgggcctgccgatcctcgacgag
gacgggttcgtcctgctgctcgacgccggccccgacgccgtccgtccgcccgagggcggg
gacgacgccggagccgacgagggggccggcgaggaggccggcgagctggactga
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