Nocardioides mesophilus: H9L09_16185
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Entry
H9L09_16185 CDS
T07004
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nmes
Nocardioides mesophilus
Pathway
nmes03030
DNA replication
nmes03410
Base excision repair
nmes03420
Nucleotide excision repair
nmes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L09_16185 (ligA)
03410 Base excision repair
H9L09_16185 (ligA)
03420 Nucleotide excision repair
H9L09_16185 (ligA)
03430 Mismatch repair
H9L09_16185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmes03032
]
H9L09_16185 (ligA)
03400 DNA repair and recombination proteins [BR:
nmes03400
]
H9L09_16185 (ligA)
Enzymes [BR:
nmes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L09_16185 (ligA)
DNA replication proteins [BR:
nmes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L09_16185 (ligA)
DNA repair and recombination proteins [BR:
nmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L09_16185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L09_16185 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L09_16185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L09_16185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Topo-V_HhH_2_2nd
DUF7575
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QNN52035
UniProt:
A0A7G9R8W0
LinkDB
All DBs
Position
3355979..3358126
Genome browser
AA seq
715 aa
AA seq
DB search
MSEIPESAGAEVAAATPAAHEEHQQLAEEVEEARWRYYVLDAPTLSDADFDARMRRLEEL
EEQFPELRTPDSPTQKVGGAVSTDFAPVDHLERMLSLDNAFSPEELATWAARIEREGITD
AEYLCELKVDGLALNLLYEDGRLVRGATRGDGRTGEDVTPNVRAIDNIPDRLTGTEEHPV
PALVEVRGEVFLPVAAFTTLNESMVEQGRPPFANPRNAAAGSLRQKDPRVTATRPLALVC
HGVGAHQGFDAVRQSEAYAALAAWGLPVSDRVRVVADLAGVQEFIDHYGEHRHSVEHEID
GVVVKVDQVALQRRLGSTSRAPRWAIAFKYPPEEVNTKLLDIRVNVGRTGRVTPYGVMEP
VKVSGSTVEMATLHNPFEVTRKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGTERAFEMP
TRCPACGTELRPEKEGDKDIRCPNARSCPAQLRERLFALASRSAFDIEALGWEGSIALLE
AGVVTDEGDLFDLTAADIARVPLYTRAAKKTDGEEAVREGRVLSANGERLVANLDAAKDQ
PLWRVLVALSIRHVGPTAARALAEHFGSLDAIRAATVEELAAAEGVGGVIAESIQAWFEV
DWHVAIVDKWRAAGVRMHDEVDESRPRTLEGLSIVVTGSLPDYSRDQAKEAILARGGKAA
SSVSKKTDFVVVGDSPGSKYDKAVSLKVPILDEDGFRVLLADGPEAAREKAQVGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagatccccgagagcgccggagccgaggtcgccgccgcgacgcccgcggcccac
gaggagcaccagcagctcgccgaggaggtcgaggaggcgcgctggcgctactacgtcctc
gatgcgccgacgctctccgacgccgacttcgacgcccggatgcggcggctggaggagctc
gaggagcagttccccgagctgcggacccccgactcgccgacgcagaaggtcggcggcgcg
gtctccaccgacttcgccccggtcgaccacctggagcggatgctcagcctggacaacgcg
ttctcgcccgaggagctcgccacctgggcggcgcggatcgagcgcgagggcatcaccgac
gcggagtacctctgcgagctcaaggtggacgggctggcgctcaacctgctctacgaggac
ggtcggttggtccgcggcgccacccgcggcgacggccgcaccggcgaggacgtgacgccc
aacgtccgcgccatcgacaacatcccggaccggctgaccggcaccgaggagcacccggtg
cccgcgctggtggaggtccgcggcgaggtgttcctcccggtggcggcgttcaccaccctc
aacgagtccatggtcgagcagggccggccgccgttcgcgaacccccgcaacgccgccgcc
ggctcgctgcggcagaaggacccgcgggtgaccgccacgcgtccgctggcgctggtctgc
cacggcgtcggcgcccaccaggggttcgacgccgtgcggcagtccgaggcctacgccgcg
ctggccgcgtggggcctgccggtcagcgaccgggtccgggtcgtcgcggacctggccggg
gtgcaggagttcatcgaccactacggcgagcaccggcactcggtggagcacgagattgac
ggcgtggtggtcaaggtcgaccaggtcgcgctgcagcgccggctcgggtcgacctcccgc
gcgccccggtgggcgatcgccttcaagtacccacccgaggaggtcaacaccaagctgctc
gacatccgggtcaacgtgggccgcaccggccgggtgacgccgtacggcgtgatggagccg
gtcaaggtgtccgggtcgacggtcgagatggccaccctgcacaacccgttcgaggtcacg
cgcaagggcgtgctgatcggcgacacggtggtgctccgcaaggccggtgacgtgatcccg
gagatcgtcgggccggtcgtcgacctgcgcgacggcaccgagcgggccttcgagatgccg
acccgctgccccgcctgcggcaccgagctgcgtccggagaaggagggcgacaaggacatc
cgctgccccaacgcgcgctcctgcccggcgcagctgcgcgagcggctgttcgcgctggcc
agccggagcgccttcgacatcgaggccctcggctgggagggatcgatcgcgctgctcgag
gcgggggtggtcaccgacgagggcgacctgttcgacctgaccgccgccgacatcgcccgg
gtgccgctctacacccgcgccgccaagaagaccgacggcgaggaggcggtccgcgagggg
cgcgtgctctcggccaacggcgagcggctggtggccaacctcgacgcggccaaggaccag
ccgctgtggcgggtgctggtcgcgctgtcgatccggcacgtcggcccgaccgcggcccgg
gcgctcgccgagcacttcgggtcgctggacgcgatccgggcggccaccgtggaggagctc
gccgcggccgagggcgtcggcggggtgatcgcggagtcgatccaggcgtggttcgaggtc
gactggcacgtcgcgatcgtggacaagtggcgggccgccggcgtccggatgcacgacgag
gtcgacgagtcgaggccgcggacgctggaggggctgagcatcgtggtcaccgggtcgctg
cccgactacagccgcgaccaggccaaggaggcgatcctggcgcgcggcggcaaggccgcc
tcgtcggtgtcgaagaagaccgacttcgtggtggtcggcgactcgcccggatcgaagtac
gacaaggcggtgtcgctcaaggtcccgatcctcgacgaggacggtttccgggtgctgctc
gcggacggccccgaggccgcccgcgagaaggcccaggtcggcgagtag
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