Nitrosospira multiformis: Nmul_A0647
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Entry
Nmul_A0647 CDS
T00302
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nmu
Nitrosospira multiformis
Pathway
nmu03030
DNA replication
nmu03410
Base excision repair
nmu03420
Nucleotide excision repair
nmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nmul_A0647
03410 Base excision repair
Nmul_A0647
03420 Nucleotide excision repair
Nmul_A0647
03430 Mismatch repair
Nmul_A0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmu03032
]
Nmul_A0647
03400 DNA repair and recombination proteins [BR:
nmu03400
]
Nmul_A0647
Enzymes [BR:
nmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Nmul_A0647
DNA replication proteins [BR:
nmu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Nmul_A0647
DNA repair and recombination proteins [BR:
nmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Nmul_A0647
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nmul_A0647
MMR (mismatch excision repair)
DNA ligase
Nmul_A0647
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nmul_A0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ABB73954
UniProt:
Q2YBB7
A0A1H5STR6
LinkDB
All DBs
Position
745040..747163
Genome browser
AA seq
707 aa
AA seq
DB search
MSERLSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELITPD
SPTQRVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRVRQSLGIAQVEYAVEPKFD
GLAISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAFLEVRGE
VLMLKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGIGVCEGG
NVPHDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDGTVYKVN
ELEYQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPVFVGGAT
VTNATLHNEDEIRRKDVMIGDRVTVRRAGDVIPEVVAVQKESRPSNAKPFVMPEHCPVCG
SRTIRLPGETLTRCTGGLFCPAQRKQAILHFASRRAMNIHGLGDKLVDHLVDNAIIRTPA
DLYKLGLAALAALDRMGEKSAGNIINEIEKSKDTTLARFIYSLGIRNVGEATARDLARYF
GGLDRLMDADVETLQQVSDVGPVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTT
DHAAGSAHPGAAAASSKIAGRSFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVV
AGADAGSKYDKALELGVALLDEAELIRLLQASQADNSSTHVDPERMV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaacgcctgagcgagatatcgcgccacatgcgggaattgcgcgatgcaatcgag
ctgcataatatccgttattacgagctggacactccgacgattcccgatgcggacttcgac
aagctgttccgcgaactggaggagctcgagcaacgtcatccggagctcataacgccagat
tcccctacccagcgcgttggtattcctcccctcaaagcgtttccccaggtcgttcaccgt
acgccgatgctttccctcagcaatgcattcaccgagggcgaggtagaggcattcgaccgg
cgtgtgcgccagtccctaggcatcgcgcaggtcgagtatgcggtagagccgaaattcgat
ggtctggccataagcctctgctatgagaacggcatgcttgtctcgggagccactcgcgga
gatggctacatcggagaggatgtaaccttgaacctgaaaaccattcgcagcattcctctc
ggcctgagggcaggagatgggagcgccgaagttcctgcatttctggaggtccggggtgag
gtattaatgttgaaagcggatttcgagcgattgaatcggcagcagcgtgaaaagaacgaa
aagacctttataaatccgcgcaatgctgccgcaggttccttgcggcaactcgatccctgc
ataactgccaatcgcaacctgaggttcttcgcatatggtatcggtgtctgcgaaggggga
aatgttcctcatgacacacacagccacttgctcgactatctctcgtcactgcgttttccg
gtaatgcgtgaacgcaggacggtgacgggcgttgccggtttgttggagtatcatcatgaa
ataaatggattgcgcgaacaattgtcttatgacatcgatggtacggtgtacaaggtcaac
gaattggaatatcaggaaaaactcggtttcgtatcccgtgccccgcgatttgcgctcgcc
cataagtttccagcgcaggaagcaacgaccgagttgcttggaatcgatgtgcaggtgggc
agaacgggggcgctgactccggtggcgcgcctcaagcctgtattcgtgggaggcgcgact
gtcaccaatgcgaccctgcataacgaagatgagatccggcgcaaggacgtcatgatcggt
gaccgggtaacggtaaggcgagcaggagatgtcattccggaagtggtcgcagttcagaag
gaaagccggccgtcgaacgcgaaacctttcgtgatgcctgagcactgccctgtttgcggg
tccaggacgattcgcttgcctggagaaactctgacccgctgcacgggcggattgttttgt
cccgctcaacggaaacaggccattctgcattttgcctcgcgtcgcgccatgaatatccac
ggactgggcgacaagctggtggatcacctggtggacaatgccatcattcggactcccgca
gacttgtataaactgggattggcagcgctcgccgcgctggatcggatgggggagaaatcg
gcgggaaatattatcaatgaaattgaaaaaagcaaagacacgaccctggctcgattcatc
tattccctgggtattcgcaacgtgggcgaggctactgcgcgagacttggcccgctatttc
ggaggactcgatcgcctgatggatgcagatgtggaaactttgcaacaggtatcggatgta
ggccctgtcgtcgcccagagcattgccgatttttttggtgaaaggcacaatcgtgaggtt
gtagagcaattgcgcgcggcgggaatccgctggaaagaaggtgcgggaacacagacaaca
gaccatgcagcaggttctgcacatccgggagcagccgccgcaagcagtaaaattgccggc
aggagctttgtgctgactggaacactgccgaccatgagccgggaggaggccagggagaaa
attgaagcgatgggagggaaggttgcgggcagcgtgtccaagaaaaccgattatgtcgtc
gccggcgcggatgcgggcagcaagtatgacaaagcgcttgaattgggagtggcgcttctc
gatgaggccgagttgataagattattgcaggcttcccaagcagataacagttcgacgcac
gtggatcctgaacggatggtttaa
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