Nosocomiicoccus massiliensis: CJ229_004110
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Entry
CJ229_004110 CDS
T09499
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nmy
Nosocomiicoccus massiliensis
Pathway
nmy03030
DNA replication
nmy03410
Base excision repair
nmy03420
Nucleotide excision repair
nmy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJ229_004110 (ligA)
03410 Base excision repair
CJ229_004110 (ligA)
03420 Nucleotide excision repair
CJ229_004110 (ligA)
03430 Mismatch repair
CJ229_004110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmy03032
]
CJ229_004110 (ligA)
03400 DNA repair and recombination proteins [BR:
nmy03400
]
CJ229_004110 (ligA)
Enzymes [BR:
nmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJ229_004110 (ligA)
DNA replication proteins [BR:
nmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJ229_004110 (ligA)
DNA repair and recombination proteins [BR:
nmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJ229_004110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJ229_004110 (ligA)
MMR (mismatch excision repair)
DNA ligase
CJ229_004110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJ229_004110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
HHH_3
RUBY_RBDX
DUF7575
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WOS96899
UniProt:
A0AAF0YN80
LinkDB
All DBs
Position
complement(768112..770082)
Genome browser
AA seq
656 aa
AA seq
DB search
MEKRMRELEKLLTQYNYEYHVLDHPSVPDETYDKLFHELLHLEEQYPELKSDTSPTSRVG
GVVLDKFEKVTHETPMLSLSNAFNEADLRAFNDRVERAVGKVEYMCELKIDGLAVSLLYQ
DGKFSQGATRGDGTVGENITDNLRTIRAIPLSTDLNAQFEVRGEAYMPKKAFETLNKRRE
ENNEQVFQNPRNAAAGSLRQLNTKLTSERNLSIFLYGTPRADILGVTSQSEALDQLDKLG
FKTNKERAVKEDIDGVIEYVNYWQEHRNELPYEIDGIVIKVNNIDLQEEIGYTVRSPKWA
IAYKFPAEEAKTKIIDIELTVGRTGVITPTAILEPVRVAGTTVARASLHNHELIEEKDIR
INDTVIIHKAGDIIPEVVRVVYEERTNQEVYKAPTQCPSCGHEAVKLDEEVAIRCINPKC
PAQIVEDIIHFASRGAMNIDGLGEKFVHQLYDAKLISDVADLYTLKKEELIELDRVGDKK
AENLLNAIEASKEAPLQKLLFGLGIRFLGQKASRLIAERFITMDNILSAEKDELMEVPEI
GEVIADSVVTYTSNEDFIHLIEKLKSAGLNMTEEVEEQESTQFDGMTFVLTGKLEELTRK
EAKEKIELNGGKVTGSVSKNTDVVVAGSDAGSKLDRARELEITVWSEADLLERLGE
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgcatgcgagaattagaaaaacttctgacgcagtacaattatgaatatcat
gttttagatcacccttcggttccagacgaaacgtatgacaaattattccatgagttactt
catcttgaagaacaatatcctgagttaaaaagtgacacgtctccaacttctagagtcgga
ggagtggtgcttgataagtttgaaaaagtcacgcatgagacgccgatgttatctttatct
aatgcgtttaacgaagcagatttacgtgcatttaacgatagagtagaacgcgcagtcgga
aaagtagagtatatgtgtgaattaaaaatcgacggtcttgcagtatcgcttttatatcaa
gacggtaaattctctcaaggtgccacacgtggcgacggtactgttggtgaaaatattact
gataacttaagaacgattcgagcgattccactgtcaacagatttaaatgcacaatttgaa
gtacgcggtgaagcgtatatgccaaaaaaagcatttgaaacgttaaataaacgtcgcgaa
gaaaataatgaacaagtattccaaaatccgagaaacgctgcagcaggtagtttacgtcaa
ctcaatacgaaactgacgagtgaacgtaatttatctatatttttatacgggacaccacgc
gcggacatattaggggtaacgtctcaaagtgaggcgctcgatcagctcgataagttagga
tttaaaacaaacaaagaacgcgcagtgaaagaagatatcgacggggtgattgaatacgtc
aactactggcaagagcaccgtaatgagttaccgtatgaaatcgacggaattgttattaaa
gtgaacaacatagacctacaagaagaaattggttatactgtccgctcgccaaaatgggca
attgcgtataagtttccagctgaagaagcaaaaacgaaaattatagacattgaactgaca
gtcggtcgtacaggtgtcattacaccgacggcaattttagaacctgttcgtgtcgctggg
acgactgttgcacgtgcgtcacttcataatcatgagctaatcgaggaaaaagatattcgt
attaacgacacggtaattatccataaagccggagatattatcccggaagttgtgcgtgtc
gtgtacgaagaacgtacaaaccaagaagtgtataaagcaccgacacagtgcccgtcatgt
ggtcatgaagcggttaagttagacgaagaagttgcgattcgttgtattaacccgaaatgt
ccggctcaaatcgtagaagatattattcactttgcttctcgaggggcaatgaatatcgac
ggactcggtgagaaatttgttcatcagttatacgatgcgaaactcatttcagacgttgca
gatctatacacacttaaaaaagaggaacttatagagttagaccgtgtgggagataaaaaa
gctgagaacctcttaaacgcaatcgaagcgagtaaagaagcaccacttcaaaagttatta
tttggtcttggtattcgttttctcggccaaaaagcatcacgtttaattgctgagagattt
ataacgatggataatattttatctgctgaaaaagacgagttgatggaagttcctgaaatc
ggtgaagtgatcgcagattctgttgtaacgtatacgtcaaacgaagattttattcatctt
atagaaaaactaaaatcagcaggtttaaatatgactgaagaggttgaagagcaagagagt
acacagtttgacgggatgacgtttgtgttaacaggtaaactcgaagagttaacacgtaag
gaagcgaaagaaaaaattgagttaaatggcgggaaagtgacaggtagtgtgtctaaaaac
acagatgtcgtcgtcgctggaagtgatgcggggtctaaattagaccgtgcgagagagtta
gaaattactgtatggagtgaagcggatttactcgaaaggttgggcgaatag
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