KEGG   PATHWAY: nni03030
Entry
nni03030                    Pathway                                
Name
DNA replication - Nipponia nippon (crested ibis)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nni03030  DNA replication
nni03030

Organism
Nipponia nippon (crested ibis) [GN:nni]
Gene
104008931  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104009158  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
104009786  MCM6; LOW QUALITY PROTEIN: DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
104009821  RFC1; replication factor C subunit 1 [KO:K10754]
104010554  RFC5; replication factor C subunit 5 [KO:K10756]
104010608  POLE; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
104010888  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
104012764  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
104012806  RPA3; replication protein A 14 kDa subunit [KO:K10740]
104013482  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
104014680  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
104015783  RPA2; replication protein A 32 kDa subunit [KO:K10739]
104015919  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
104016116  RFC2; replication factor C subunit 2 [KO:K10755]
104016871  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
104019457  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
104019599  RFC4; replication factor C subunit 4 [KO:K10755]
104019797  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
104020287  RFC3; replication factor C subunit 3 [KO:K10756]
104020619  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
104020916  PRIM2; DNA primase large subunit [KO:K02685]
104021568  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
104022501  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
104022610  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
104022693  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
104022757  POLD3; LOW QUALITY PROTEIN: DNA polymerase delta subunit 3 [KO:K03504]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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