KEGG   PATHWAY: nni03050
Entry
nni03050                    Pathway                                
Name
Proteasome - Nipponia nippon (crested ibis)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
nni03050  Proteasome
nni03050

Other DBs
GO: 0000502
Organism
Nipponia nippon (crested ibis) [GN:nni]
Gene
104009576  ADRM1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
104009603  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
104010040  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
104010811  PSMC2; 26S protease regulatory subunit 7 [KO:K03061]
104010958  PSMA1; LOW QUALITY PROTEIN: proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
104011009  IFNG; interferon gamma [KO:K04687]
104011414  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
104011581  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
104011779  PSMA6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
104011880  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
104012267  PSMC5; 26S protease regulatory subunit 8 [KO:K03066]
104012413  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
104012529  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
104012821  SHFM1; 26S proteasome complex subunit DSS1 [KO:K10881]
104014363  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
104014419  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
104014426  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
104015630  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
104015713  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
104016738  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
104016917  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 isoform X1 [KO:K03037]
104017786  PSMB2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
104017865  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
104018245  PSMC4; 26S protease regulatory subunit 6B [KO:K03063]
104018918  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
104019423  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
104019478  PSMC6; 26S protease regulatory subunit 10B [KO:K03064]
104020046  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
104020390  PSMC3; 26S protease regulatory subunit 6A [KO:K03065]
104020769  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
104022236  PSMC1; 26S protease regulatory subunit 4 [KO:K03062]
104022407  PSME4; proteasome activator complex subunit 4 [KO:K06699]
104023082  POMP; proteasome maturation protein [KO:K11599]
104023321  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
104023609  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
nni04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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