Nipponia nippon (crested ibis): 104009386
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Entry
104009386 CDS
T05756
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104009386 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nni03000
]
104009386 (KDM2A)
04121 Ubiquitin system [BR:
nni04121
]
104009386 (KDM2A)
03036 Chromosome and associated proteins [BR:
nni03036
]
104009386 (KDM2A)
Enzymes [BR:
nni01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104009386 (KDM2A)
Transcription factors [BR:
nni03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104009386 (KDM2A)
Ubiquitin system [BR:
nni04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104009386 (KDM2A)
Chromosome and associated proteins [BR:
nni03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104009386 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104009386 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
104009386
NCBI-ProteinID:
XP_009459643
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MRRRYEDDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLI
FRSSDGLGIKMPDPDFSVNDVRLCVGSRRMVDVMDVNTQRDIEMSMAQWARYYETPEAER
EKLYNVISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQ
KYCLMSVKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIF
LGDRVSECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDR
TRVPNKFRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEE
EEEEEEDAAGKEPRRPVTRRSVLTSPIANGANVDYDELGKSCRSSLPGLKKTPSIDSSXX
XXXXXXXRGSQNGQAWDPNGGSPRKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGI
EDEDALIADVKLLLEEYANSDPKLALTGIPIVQWPKRDKLKLQARLRVRLPTIPITKPHT
MKPTPRPTPVRPTVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQS
CVLRQCLAPRLPHSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLN
DELPNCWECPKCYQGDDTEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPML
QLIHDPASPRGVVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGK
KELSEVEKAKLHGSYLTVTLQRPTKDVHGTSIVPKLQAITASSTNLQHSPRVVMRHAPAR
MPLRGGGEEEAAAEEDEEEEEEEDENAEEAGAARLNGRGGRAQEGEESWMQREVWMSVFR
YLTRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTN
ISKKQLTWLVNRLPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLL
TPPTDKPSQDNRSKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSAN
LLTAVGSSTRNSLTELNMAGCNKLTDQALLYLRRISNVTLIDLRGCKQITRKACEHFISD
LSINSLYCLSDEKLIQKIS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggcgttatgaggacgatggcatctccgatgatgaaattgaagggaagaggacg
ttcgacctggaggaaaagctgtccaccaacaagtttaactccaccttcgtggtcttcatg
gaaggcaaagacttcacagttgaatacatccagcggggcggcctgagagaccctctcatc
ttcaggagctctgacggcctgggaataaagatgccagatccggacttcagcgtgaatgat
gtgcggctgtgtgtcgggagccgacggatggtggatgtcatggatgtgaacacgcagagg
gatattgagatgtccatggcgcagtgggcccgctactatgaaacaccagaggctgagcgg
gagaaactttacaacgtcatcagcctggagttcagccacaccaaactggagaacctggtg
cagagacctgctacggtggatttgattgactgggttgataacatgtggcccaggcacctg
aaggagagtcagacagagtctacgaacgctatcctggagatgcagtacccaaaggtgcag
aaatactgtctgatgagtgtcaagggctgctacacagatttccacgtggacttcggtggc
acttctgtgtggtaccacatccaccgagggggaaagatcttctggctgatccctcctaca
ccccagaacctggagctctatgaaaactggcttctctcagggaagcagggagacattttt
cttggggacagagtgtcagagtgccagcgcatcgagctcaagcagggctacacgtttgtc
atcccctcaggttggatccatgctgtgtacactcccatggacacgctggttttcggaggc
aacttcttacacagtttcaacatccctatgcagctccggatctacagcattgaagaccgc
acgcgggtcccaaataagtttcgttatcccttctattacgagatgtgttggtacgtgctg
gagcgctacgtctactgcatcaccagccgctcacatctgaccaaggacttccagaaggaa
tcgctcagtatggatatggagctgagctcctcggactcagtaaacatggaagaggaggag
gaggaagaagaggaggaggatgcagcagggaaggaacccaggcgaccggtcacaaggcgg
tccgttctcaccagccccatagccaatggtgccaatgtggactatgatgaactgggcaag
agctgccggagcagcctgccgggtctgaagaagaccccgtctatagactcttccnnnnnn
nnnnnnnnnnnnnnnnnnnnccggggctcccaaaacggccaggcctgggacccgaacggt
ggcagcccgcgcaagagcaggaaggtacacctgacgcagtttgagctggaggggctgcgc
tgcctcgtggacaaactggagtcgctccccctgcacaagaagtgcgttcccaccggcatt
gaggatgaggacgccctcatcgccgacgtcaagctgctgctagaagaatacgcgaacagc
gaccccaaactggcacttacaggcatccccatcgtccagtggcccaagagagataagcta
aagctccaggcccggctgagggtgcgcctgcccaccatccccatcaccaagccacacacc
atgaagccaaccccccgcccgacacccgtcaggcctacagtctctcccatcgtgtcaggc
gccaggcggaggcgggtgcggtgccgaaaatgcaaggcttgcatgcagggcgagtgtggc
atgtgccactattgcagggacatgaagaagtttggtgggcctggccgcatgaagcagtcc
tgcgtcctccggcaatgcttagcgcccaggctgcctcactcggtcacgtgtgcactttgc
ggggaggtggatcagaacgaggactcgcaggactttgagaaaaagctcatggagtgctgc
atctgcaacgagattgtccaccctggctgcctgcagatggatggggaagggctgctcaac
gatgagctccctaactgctgggagtgccccaaatgctaccagggtgacgacacagagaag
ggccagaagaggaaggtggaggagagcgacgacgacacggcgcaagccaaggtgctgcga
cccctgcggagctgtgaggagcccctgacccccccgcccaactcacccacccccatgctg
cagctgatccacgacccggcatctccacgaggggtggtgacgcgctcgtccccgggagcc
ggccccagcgaccaccacagcgccagcagagacgagcgcttcaagcgacggcagctgctg
cggctccaggccaccgagcgaacgatggtgcgggagaaggagaacaaccccagcggcaag
aaggagctgtcggaggtggagaaggccaagctgcacggctcctacctcaccgtgacgctc
caacgccccaccaaagacgtccacggcacttctatcgtccccaagctgcaagccatcacg
gcctcctccaccaacctgcagcactctccccgcgtcgtcatgcgccatgcacccgccagg
atgcccctgcgaggcggcggggaggaggaagcagctgctgaggaggatgaggaggaagag
gaagaggaggacgagaacgcggaggaggcgggggcggcccggctcaacggccgaggcggc
cgggcgcaggagggcgaggagagctggatgcagcgcgaggtgtggatgtccgtcttccgc
tacctcactcgccgggagctctgcgagtgcatgcgggtgtgcaagacctggtacaagtgg
tgctgtgacaagagattgtggacaaagatagatttgagcaggtgcaagtccatcaccccc
caggcgctgagcggcatcatcaaaagacagccggtcagcctcgacctcagttggaccaat
atctccaaaaaacagcttacgtggctcgtcaacaggctgccaggcctgaaagacctcatc
ttagcgggctgttcctggtctgcggtctgtgctctcagtacctccagctgcccccttctc
aggaccctcgatcttcggtgggcagtaggaatcaaggaccctcagatccgggacttactc
acccctccgacagacaaacccagtcaggacaatcgcagcaaactccgcaacatgatcgat
ttccggctcgccggcctggacatcaccgacgccacgctgcggctgatcatccgccatatg
cccctgctctcccgcctcgacctcagccactgcaaccaccttacggaccagtcagccaac
ctcctcacggccgtgggctcttcgacacgcaactccctcaccgagctcaacatggcaggc
tgcaataagctgacggaccaggccttgctgtacctgcgccgcatctccaacgtcactcta
atcgacctgcgaggttgcaaacagatcacccgcaaagcctgtgagcacttcatctcggac
ctgtccatcaacagcctctactgcctgtccgatgagaagctgatccaaaaaatcagctag
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integrated database retrieval system
