Nipponia nippon (crested ibis): 104019494
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Entry
104019494 CDS
T05756
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104019494 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nni03000
]
104019494 (KDM2B)
04121 Ubiquitin system [BR:
nni04121
]
104019494 (KDM2B)
03036 Chromosome and associated proteins [BR:
nni03036
]
104019494 (KDM2B)
Enzymes [BR:
nni01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104019494 (KDM2B)
Transcription factors [BR:
nni03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104019494 (KDM2B)
Ubiquitin system [BR:
nni04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104019494 (KDM2B)
Chromosome and associated proteins [BR:
nni03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104019494 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104019494 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
104019494
NCBI-ProteinID:
XP_009471033
LinkDB
All DBs
Position
Unknown
AA seq
1259 aa
AA seq
DB search
MEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVHAMDGKD
FTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQKGVEM
SMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQHLKEKQ
TDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQKESMLI
DAKRKHSTDSYSSDSWLDMDEESCDAHIQEEKDDSLDKNSKSLVDGSSSPNSTHSEGKEG
AGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGL
KALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVSWPKKTT
KNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHP
GCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDN
KEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEKPQEPTMRKR
LKLGKEEKLFRKKRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDSDQSRSSSPT
AGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEP
ESENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQ
MERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCC
DKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLS
GCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVE
LRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSD
CNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgatctatcggccgaaggcgatacgat
gagaacgaggacctctccgacgtggaggaaattgtcagcatcaggagtttcaatttggaa
gagaaattaaagagtaaaatgtatcacggggatttcgtccatgccatggacgggaaagat
tttacttttgagtatgtgcaaagagaagctctcagagttccccttatcttcagaaataag
gatggactgggaattaagatgcctgacccggatttcaccgtcagagatgtgaagctatta
gtgggaagccgacggatagtggatgtgatggatgtgaacacgcagaaaggcgttgaaatg
agcatgtctcaatttgtgagatactatgaaacaccagaggcccagcgtgaaaaactctac
aatgtcatcagcctggagttcagtcacacgaagctggagaacattgtcaagcgccccaac
gtggtggacttagttgactgggtggataatatgtggccgcaacatttgaaggagaaacag
acggatgctaccaatgctatttcagagatgaaataccccaaagtgaaaaagtactgtttg
atgagtgtgaaaggatgcttcactgattttcatattgattttggtggcacttcagtgtgg
tatcacgttttccgtggggggaagatcttctggctgattccgcctactctgcagaatcta
gaactttatgaagaatgggttctttcaggaaagcaaagtgatatctttctgggagacagg
gtggaacgatgccaaagaattgagctgaaacagggctatacgttcttcattccttcaggg
tggatacacgcggtttatactccagtagattctctggtgtttggtggaaatatcctgcat
agctttaatgttcccatgcagcttcgcatctatgaaattgaggacagaacaagggtgcat
gccaaattccgttatcctttctactatgaaatgtgctggtatgttctggagagatacgtg
tcctgtgtgacccagcgctgccacctcagcaaagagtaccagaaagaatcaatgttaatt
gatgcaaaaagaaaacacagcacagacagctattcatcagattcgtggttagacatggat
gaagaatcttgtgatgcccatatccaggaggagaaggatgacagcttggataagaactcc
aaatccttggtggatggctcttcctcacccaacagcacacactcagaagggaaggagggt
gcaggaagaaaacaaaaagccacagtaatgagatacctaaaaagaactttgtctaatgag
tcagacgacagcgtaaaatcgacgacccccacggactatcccaaaacaccaacggggtct
ccagctacagaagtttcaaccaaatggactcacctcacagaatttgaactgaagggttta
aaagccctggtggaaaagcttgaatctctcccagagaacaagaagtgtgttccagaaggc
atcgaagatccgcaggctctcctagaggacatgaagaacatactgaaggaacatgctgac
gatgaccaaaatcttgccatttcgggtgtccctgtggtcagctggcccaagaagaccaca
aagaacagggcagtcggacggcccaaagggaaactgggcactgcttctgcggtaaagctc
gcagctaatcggacaactgctggagcacgtcggaggaggacgcgatgccgcaagtgcgag
gcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaagacatgaagaaatttggg
ggacctggcaggatgaaacagtcctgtattatgaggcagtgtattgcaccggtgttgcct
catactgccgtgtgtctggtgtgtggagaagctgggaaagaggacactgtggaagaggag
gagagcaagtttaatctcatgctaatggaatgctccatttgtaatgaaataatacaccca
ggatgccttaaggtaaaggaatcggatggtgtggttaacgatgagctgccgaactgctgg
gagtgtccaaagtgcaaccacgcagggaaaactggaaaacaaaagcgcggaccaggattc
aaatacgcatcaaatctcccaggctcattgctgaaggaacagaaaatgaatagagacaat
aaggaagtaacagatgctgcaaaacggaaaggggattgtgaagaaactcccaggcggaaa
tcggaggaacattccaaaaagactcaagttgactcaatactgaggagaaagtcagacgaa
gtgcatctgtggaggaaaaggaaatttgagaaaccccaggaacccactatgagaaagcgg
ctaaaacttggaaaagaagagaaactcttcaggaagaagcggcgatcatggaaggctcca
gatgaccgaactgccatgatcaaacccctgcggcgcctcaagcaggagccagaggatgac
ctgccagaagcacctcccaggtccaaggatagtgaccagtcacggtccagctcgcccact
gcaggtcccagcacagagggtgccgagcccagggacaagaagaagttcaagatgaggcgg
aaaaggcggcttcccaataaggaactgagcaaggagctcagcaaggagctcaaccaggag
atccaaaaaaccgagaacagccttgccaatgagaatcaccaacccatcaaatctgaacct
gagagcgagaatgaggaacctaagcgtgctttgaacaacagcgagagactccataggttc
agcaaagggttaaacgggactccccgggagctgaggcaccagctcatccccagccttcga
agcacacctcggggaattacccggccaccgccttcgctctctcctcccaaatgcattcag
atggaacggcacgttatccggccacctcccatcagcccccctccggactcgctccccctg
gatgacggggcagcccacgtgatgcagagggaagtctggatggctgtctttagctacctc
agtcatagagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgt
gacaaaagattatggaccaaaatagatttaaaccattgtaaatccatcactccacttatg
cttagtggcattattaggagacagcctgtaacccttgatcttagctggacaaatatatct
aaaaagcagctgagttggcttatcaacagactgccaggtcttcgagacctgctgttatca
gggtgctcatggatagcagtgtcggcactttgtagttccagttgtcctttgctccgaact
ctggacgtgcagtgggcagaaggcctgaaagacgcacaaatgagagacctcttgtcgcca
cccacagataaccggccaggtcagatcgacaaccggagcaaactacggaacatagtggag
ctgcgtttggctggcctggatattacagatgcttctttgcggctgatcataaggcacatg
cctctgctctccaaactcaatctcagttactgtaatcatgtgacggatcagtctattaac
ctgctgaccgcggttggaaccaccacgcgggattcattaacggaaattaatttatcagac
tgcaataaggtgactgatcagtgcctgtcttacttcaaacgttgcggaaacatctgccag
atcgacctgaggtactgcaagcaagtgacaaaagaaggctgcgagcagttcatagcggaa
atgtccgtaagtgttcagtttgggcaagtggaagaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
