Nocardia nova: NONO_c57410
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Entry
NONO_c57410 CDS
T03032
Symbol
ligA2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nno
Nocardia nova
Pathway
nno03030
DNA replication
nno03410
Base excision repair
nno03420
Nucleotide excision repair
nno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NONO_c57410 (ligA2)
03410 Base excision repair
NONO_c57410 (ligA2)
03420 Nucleotide excision repair
NONO_c57410 (ligA2)
03430 Mismatch repair
NONO_c57410 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nno03032
]
NONO_c57410 (ligA2)
03400 DNA repair and recombination proteins [BR:
nno03400
]
NONO_c57410 (ligA2)
Enzymes [BR:
nno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NONO_c57410 (ligA2)
DNA replication proteins [BR:
nno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NONO_c57410 (ligA2)
DNA repair and recombination proteins [BR:
nno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NONO_c57410 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NONO_c57410 (ligA2)
MMR (mismatch excision repair)
DNA ligase
NONO_c57410 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NONO_c57410 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AHH20519
UniProt:
W5TN19
LinkDB
All DBs
Position
complement(6257176..6259389)
Genome browser
AA seq
737 aa
AA seq
DB search
MGSVHARDVRERCAEMSAGWDTVPSVSESGIDSARAAEARDAADAATADERTAWQQLAEQ
VREHQFRYYVRDAPIISDGEFDKLFQRLLAMEEAHPDLRTPDSPTQLVGGGFETGFTAVD
HLERMLSLDNVFDEAEMRAWVSRVEAETGQNIHFVCEVKIDGVALNLVYENGRLVRGATR
GDGRTGEDVTLNARTISDIPEQLTATAEFPIPELLEIRGEVYFRLEDFENLNAAIVAEGK
PAYANPRNTAAGSLRQKDPAVTARRRLRMICHGFGRMAGFSPTSQYEAYQALAAWGLPVS
AHTVRVQGADAVMERVRYWGEHRHDIEHEIDGQVVKVDEFSLQRRLGATSRAPRWAIAYK
YPPEEATTRLLDIQVNVGRTGRVTPFAVMEPVTVAGSTVAMATLHNAAEVRRKGVLIGDT
VTIRKAGDVIPEVLGPVVDVRDGSERSFVMPTHCPECGTELAPEKEGDADIRCPNQRHCP
AQLRERVFHMAGRSAFDIEALGYEAAVDLLKSGAIADEGDLFDLTEEKLLGTTLFVNKDG
SLSANGNRLLQNLDSAKNKPLWRVLVALSVRHVGPPVARSLAGELGSLAAIEAASVAELT
VVDGVGPIIATAVREWFTVDWHRAIVAKWRAAGVRMEDERDESIERNLAGLSIVVTGSLQ
GFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGEAPGSKAAKAEELGVPILDEDGFRLLLA
EGPDAVGPEAEPAEDQD
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggtacatgcccgcgacgtgcgcgaacgctgcgcggagatgtcggcgggctgg
gatactgtgccctctgtgagtgaatccggaatcgacagcgcccgcgccgcggaagcgcgc
gatgctgcggacgcggccaccgcggacgagcgcaccgcgtggcagcagctggccgaacag
gtccgcgagcaccagttccggtactacgtccgggacgcgccgatcatctccgacggcgaa
ttcgacaagttgttccagcgattgctcgcgatggaggaggcgcatccggatctgcggacg
ccggattcgccgacccagctggtcggcggcggtttcgagaccggcttcaccgcggtcgac
catctcgagcgcatgctctcgctggacaatgtgttcgacgaggcggagatgcgcgcctgg
gtctcgcgggtcgaggccgagaccggtcagaacattcacttcgtctgcgaggtgaagatc
gacggggtcgcgctgaacctggtctacgagaacggccgcctcgtgcgcggcgccacccgc
ggtgacggccgcaccggtgaggatgtgacactcaacgcccgcaccatctccgacatcccc
gaacagctcaccgccacagcggaattcccgattccggaactgctggagattcgtggcgag
gtgtatttccggctcgaggatttcgagaatctcaacgccgccatcgtggccgagggcaaa
ccggcgtacgcgaatccgcgcaataccgcggcgggttcgctgcggcagaaggatccggcg
gtcaccgcgcgccgccggttgcggatgatctgtcacggtttcggccggatggccggcttc
agcccgacctcccagtacgaggcataccaggcgctggcggcatggggcctgccggtctcg
gcgcataccgtgcgggtgcagggtgcggacgcggtcatggagcgggtccggtactggggc
gagcaccgccacgatatcgagcacgagatcgacggccaggtggtcaaggtcgacgagttc
tcgctgcaacgccgcctcggcgccacctcgcgggccccgcgctgggccatcgcctacaaa
tatccgcccgaggaggccaccacccggctgctcgacatccaggtcaatgtcggccgcacc
ggccgggtgacgcccttcgcggtgatggaaccggtcactgtcgccggttccacggtcgcg
atggcgacgctgcacaatgccgccgaggtgcggcgcaagggtgtgctgatcggcgatacg
gtcaccatccgcaaggccggtgacgtcattcccgaggtgctcggaccggtggtcgatgtg
cgcgacgggtccgagcggtcctttgtcatgcccacgcactgtcccgaatgcggcaccgaa
ctcgctcccgagaaggagggcgatgccgatatccgctgcccgaatcagcggcactgcccg
gcacaattgcgggagcgggtcttccacatggccggtcgcagtgccttcgacatcgaggcc
ctggggtacgaggccgcggtggatctgctgaagtccggcgcgatcgccgacgagggcgac
ctgttcgacctgaccgaggagaagttgctcggcacaacgcttttcgtcaacaaggacggc
tccctgtcggccaacggcaaccgattgctgcagaatctggactcggcgaagaacaagccg
ctgtggcgggtcctggtcgccctgtccgttcgccacgtcgggccgccggtggcgcggtcg
ctggccggggagctgggcagtctcgcggcgatcgaggcggcctcggtggcggaactgacc
gttgtggacggcgtcggcccgatcatcgccaccgcggtgcgggagtggttcaccgtcgac
tggcatcgcgccatcgtggcgaagtggcgcgcggccggggtgcggatggaggacgagcgc
gacgagtccatcgagcgcaatctcgcgggcctgtcgatcgtcgtcaccggttcgctgcaa
gggttttcccgtgacgaggccaaggaggccattctcgtgcggggcgggaaggccgcgggt
tcggtctcgaagaagacggcgttcgtggtgatcggggaggctcccggatccaaggccgcc
aaggccgaggaactcggtgtgcctatcctcgacgaggacggcttccgcctgctgctggcc
gaggggcccgatgcggtaggacccgaggcggaacctgcggaggatcaggattga
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