Nestor notabilis (Kea): 104399108
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Entry
104399108 CDS
T08494
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nnt
Nestor notabilis (Kea)
Pathway
nnt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104399108 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nnt03400
]
104399108 (LIG4)
Enzymes [BR:
nnt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104399108 (LIG4)
DNA repair and recombination proteins [BR:
nnt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104399108 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
SKA1
DUF7128
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
104399108
NCBI-ProteinID:
XP_010017611
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASATASQPSPKRTVASHVPFADLCSTLERIQTCKSRPDKTKYFKEFLDSWRKFHGALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLHLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNVAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNQTFYIETKLDGERIQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNAFKNNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMM
EDSDLQTCFCIFDVLMVNDQKLGHEVLSKRYEILNSVFTPVTGRIHVIHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPRPNEKPTIFHTICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGIEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLADLRSKAEGKLASRHLHVDDYEPQEKKRKTVSKVKKIIGIAEQFKAPDLSSVNKIS
NVFEDVEFCVMTGTENNSKPELESRIAEWGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVTQLKE
VFSRMKANKVMPLDVIAELEERYSWNSCQLSIFRGNIIYVDCYAVVNEPRTKIRGTTLSI
RALELRFYGATVVSHLEESVSHVVIGEDHSRVKEIKKLRRRFGKKFKIVSELWVIESVTE
EVPKNENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcgactgcttcacagccttctcctaaaagaaccgtggcctctcatgtgcct
ttcgcagatctgtgttctactctggagcggatacagacgtgtaaatctcgtccagacaaa
accaagtatttcaaggagtttctggattcctggaggaagttccatggtgctcttcatcaa
aaggagaaagatgtcacagattctttttatccagctatgcgacttattcttccacagttg
gaaagagagaggatggcttatggaattaaagaaacaatgcttgcaaagctgtacattgaa
ctgcttcatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggggacgctggagattttgcaatgattgcatactttgtgttgaaacct
agaagcccaaaacagggcaggctgacaatagaacaagttaatgaacacttagatgcaata
gctaacaataatgttgctaaaaacaagggtctattaaagaaaagtcttctccagttgatt
acccagagcacagcactggagcaaaagtggcttatccggatgattataaaggatctaaag
cttggtgtcagtcaacaaactatattttccatttttcatcctgatgctgttgagttgcac
aatgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agcgatgtttctatcacgttgttttctgcctttaagccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataatcagacattctacatagaaactaagctggac
ggtgaacgtatacagatgcacaaagatggagatgtatataaatatttttcccgaaatgga
tttgactatactcagcagtttggtgcttccccccttgatggttcattaacaccatttatt
cataatgcatttaagaacaatatacaaaattgtattctcgatggtgaaatgatggcttac
aatcctgagacacaaacctttatgcaaaaaggaaacaggtttgacataaaaagaatgatg
gaggactctgatctgcagacttgcttctgtatatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaaggtatgaaatcttaaatagtgtatttacacca
gtaacaggcaggatacatgttatccataaaagaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagacaacagagaggaagggattatggtgaaagaccctatg
tccacctacaaacctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
agtgggctgatggatgaactggaccttttaattgttggtggctactgggggaagggctca
cgtggtgggatgatgtctcattttctgtgtgctattgcagagacaccccgtccgaatgaa
aaacctaccattttccacaccatttgtcgtgttggctctggctatactatgaaggagttg
tatgacctaggtttgaaactggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaattgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atcgttcagatcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtatgagtgcatgact
tcagacatgttagcagatctcaggagcaaagcagaagggaagctggcatctaggcacctt
catgtagatgattatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaaaaag
ataattggaatagctgagcagtttaaagctcctgatctttctagtgttaacaagatttca
aatgtatttgaagatgttgaattttgtgttatgacaggaacggaaaacaactcaaagcct
gaactggaaagcagaatagccgaatggggtggcagcgtggtacagaacccagggccagag
acttactgtgtcattgtaggagctgagaatgtcagagtgaagaacatcattgcttccaac
aaatatgatgtggtgagggcagagtggcttcttcagtgttttcaaaccaaaatgctggtg
ccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacacagcagacacagatgttacccaactcaaggaa
gtgttctcaagaatgaaagccaataaggttatgcctttggacgtgattgcagagttagaa
gaacgttactcatggaacagctgtcagctcagtatattcagaggaaacattatttatgtg
gactgctatgctgttgttaatgagcccagaaccaaaatccgtggaacaacactatcaatt
agagctttggagctgcgtttttatggtgcaacagtagtctctcaccttgaagagagtgtc
tcccatgttgttataggagaagatcactcacgggtgaaagagataaagaaactcaggaga
agatttgggaaaaaatttaaaatcgtatccgagctgtgggtaatagagtcagtgacagaa
gaagtcccaaagaatgaaaatcagtacttaatttaa
DBGET
integrated database retrieval system
